RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 ZXDAP98168 799 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 ZC2HC1CQ53FD0 456 aaPredicted RBP16.14■□□□□ 0.17
LINC00643-206ENST00000623985 ANKS3Q6ZW76 656 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 ZDHHC14Q8IZN3 488 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 PLCD3Q8N3E9 789 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 KREMEN2Q8NCW0 462 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 TSPAN18Q96SJ8 248 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 MSTO1Q9BUK6 570 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 OLFML3Q9NRN5 406 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 TUBGCP4Q9UGJ1 667 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 HCN4Q9Y3Q4 1203 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 CLUHO75153 1309 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 OBSL1O75147 1896 aa16.14■□□□□ 0.17
LINC00643-206ENST00000623985 MIA3Q5JRA6 1907 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 FRMD3A2A2Y4 597 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 SYN3O14994 580 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 XPOTO43592 962 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 CUTAO60888 179 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 RFPL2O75678 378 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 SPATA31D3P0C874 917 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 IGFBP6P24592 240 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 ENOX2Q16206 610 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 LIN9Q5TKA1 542 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 FOXD4L5Q5VV16 416 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 ATL3Q6DD88 541 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 SPATA31D4Q6ZUB0 917 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 OTOP3Q7RTS5 596 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 ZNF720Q7Z2F6 126 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 PDILTQ8N807 584 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 KCNG4Q8TDN1 519 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 FOXD4L4Q8WXT5 416 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 SMG7Q92540 1137 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 ACSF2Q96CM8 615 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 KIF12Q96FN5 646 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 TNMDQ9H2S6 317 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 CUEDC2Q9H467 287 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 MRPL44Q9H9J2 332 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 RPF1Q9H9Y2 349 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 TFIP11Q9UBB9 837 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 UBQLN1Q9UMX0 589 aaKnown RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 NUB1Q9Y5A7 615 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 BACE2Q9Y5Z0 518 aa16.13■□□□□ 0.17
LINC00643-206ENST00000623985 NUP210Q8TEM1 1887 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-206ENST00000623985 I3L4J1 428 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ZMYND10O75800 440 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ADRB2P07550 413 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 CYP3A5P20815 502 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 LRPAP1P30533 357 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 HOXA9P31269 272 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 SIGLEC14Q08ET2 396 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 MTMR3Q13615 1198 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ALCAMQ13740 583 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 PKP1Q13835 747 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 RAB33AQ14088 237 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ZBTB41Q5SVQ8 909 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 SLFN12LQ6IEE8 588 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 CD302Q8IX05 232 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 STAMQ92783 540 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ZNF707Q96C28 371 aaPredicted RBP16.12■□□□□ 0.17
LINC00643-206ENST00000623985 SUSD3Q96L08 255 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 STRA6Q9BX79 667 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 PRKD2Q9BZL6 878 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 WDR6Q9NNW5 1121 aaKnown RBP16.12■□□□□ 0.17
LINC00643-206ENST00000623985 CPSF3Q9UKF6 684 aaKnown RBP16.12■□□□□ 0.17
LINC00643-206ENST00000623985 SORCS3Q9UPU3 1222 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 CDY1Q9Y6F8 540 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 STYXL1Q9Y6J8 313 aa16.12■□□□□ 0.17
LINC00643-206ENST00000623985 ADAM12O43184 909 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 GCNT3O95395 438 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 HNRNPA1P09651 372 aaKnown RBP eCLIP16.11■□□□□ 0.17
LINC00643-206ENST00000623985 MYBP10242 640 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 IDEP14735 1019 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 MCM4P33991 863 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 ZBTB6Q15916 424 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 E2F4Q16254 413 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 VARS2Q5ST30 1063 aaKnown RBP16.11■□□□□ 0.17
LINC00643-206ENST00000623985 L1TD1Q5T7N2 865 aaKnown RBP16.11■□□□□ 0.17
LINC00643-206ENST00000623985 TRIM67Q6ZTA4 783 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 PANK2Q9BZ23 570 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 LRRC27Q9C0I9 530 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 PIDD1Q9HB75 910 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 KBTBD4Q9NVX7 518 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 EXOC7Q9UPT5 735 aa16.11■□□□□ 0.17
LINC00643-206ENST00000623985 ZNF638Q14966 1978 aaKnown RBP16.11■□□□□ 0.17
LINC00643-206ENST00000623985 PTPRDP23468 1912 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 LACTBL1A8MY62 500 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 TISP43B9A030 160 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 ANKRD63C9JTQ0 380 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 C8AP07357 584 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 OR1D2P34982 312 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 POU5F1Q01860 360 aaKnown RBP16.1■□□□□ 0.17
LINC00643-206ENST00000623985 SPAG1Q07617 926 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 FOXD4L6Q3SYB3 417 aaPredicted RBP16.1■□□□□ 0.17
LINC00643-206ENST00000623985 AXDND1Q5T1B0 1012 aaPredicted RBP16.1■□□□□ 0.17
LINC00643-206ENST00000623985 ADALQ6DHV7 355 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 SLC8B1Q6J4K2 584 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 SHC4Q6S5L8 630 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 FOXD4L3Q6VB84 417 aaPredicted RBP16.1■□□□□ 0.17
LINC00643-206ENST00000623985 HFE2Q6ZVN8 426 aa16.1■□□□□ 0.17
LINC00643-206ENST00000623985 RTL10Q7L3V2 364 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms