RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 RAP2AP10114 183 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 EGR2P11161 476 aaPredicted RBP6.78□□□□□ -1.32
VPS29-212ENST00000621131 FPR1P21462 350 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 TGM1P22735 817 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 MGAT2Q10469 447 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 DRC7Q8IY82 874 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 TMEM132CQ8N3T6 1108 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 ATL2Q8NHH9 583 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 SENP6Q9GZR1 1112 aaPredicted RBP6.78□□□□□ -1.32
VPS29-212ENST00000621131 ZNF277Q9NRM2 450 aaPredicted RBP6.78□□□□□ -1.32
VPS29-212ENST00000621131 AJAP1Q9UKB5 411 aaPredicted RBP6.78□□□□□ -1.32
VPS29-212ENST00000621131 ZBTB21Q9ULJ3 1066 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 GPR45Q9Y5Y3 372 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 FYCO1Q9BQS8 1478 aa6.78□□□□□ -1.32
VPS29-212ENST00000621131 PCSK5Q92824 1860 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 ATP5JP18859 108 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 AGXTP21549 392 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 PCSK1P29120 753 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 ALDH1A3P47895 512 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 SCAPQ12770 1279 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 ABHD17BQ5VST6 288 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 B3GNTL1Q67FW5 361 aaPredicted RBP6.77□□□□□ -1.33
VPS29-212ENST00000621131 ARMC6Q6NXE6 501 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 SEM1Q6ZVN7 128 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 MAPKAPK5Q8IW41 473 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 CMTR2Q8IYT2 770 aaKnown RBP6.77□□□□□ -1.33
VPS29-212ENST00000621131 SUPT20HQ8NEM7 779 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 ASB10Q8WXI3 467 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 SLC2A13Q96QE2 648 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 MYOCQ99972 504 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 TMX1Q9H3N1 280 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 ACTL7AQ9Y615 435 aa6.77□□□□□ -1.33
VPS29-212ENST00000621131 PCF11O94913 1555 aaKnown RBP6.77□□□□□ -1.33
VPS29-212ENST00000621131 KIAA0586Q9BVV6 1533 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 COL11A2P13942 1736 aaPredicted RBP6.76□□□□□ -1.33
VPS29-212ENST00000621131 CCDC78A2IDD5 438 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 PPFIA2O75334 1257 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 PRSS23O95084 383 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 AMY1AP04745 511 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 GCSHP23434 173 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 SEC24CP53992 1094 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 FOXI1Q12951 378 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 KLF1Q13351 362 aaPredicted RBP6.76□□□□□ -1.33
VPS29-212ENST00000621131 CYFIP2Q96F07 1278 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 FUBP3Q96I24 572 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS29-212ENST00000621131 TMEM140Q9NV12 185 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 FBXO34Q9NWN3 711 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 TIAM1Q13009 1591 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 TSPOAP1O95153 1857 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 HECW1Q76N89 1606 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 FHOD3Q2V2M9 1422 aa6.76□□□□□ -1.33
VPS29-212ENST00000621131 PPRC1Q5VV67 1664 aaKnown RBP6.75□□□□□ -1.33
VPS29-212ENST00000621131 A0A1B0GTW7 788 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 TRIM75PA6NK02 468 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 CDKL5O76039 1030 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 NUDT3O95989 172 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 HKR1P10072 659 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 SLC6A2P23975 617 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 AVPR1BP47901 424 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 OCA2Q04671 838 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 INAVAQ3KP66 663 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 ZNF529Q6P280 563 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 FUBP1Q96AE4 644 aaKnown RBP6.75□□□□□ -1.33
VPS29-212ENST00000621131 TMEM74BQ9NUR3 256 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 ZNHIT2Q9UHR6 403 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 DNM3Q9UQ16 869 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 UGGT2Q9NYU1 1516 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 NUP160Q12769 1436 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 CASKIN1Q8WXD9 1431 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 WASHC2AQ641Q2 1341 aa6.75□□□□□ -1.33
VPS29-212ENST00000621131 FAM171A2A8MVW0 826 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 FOSP01100 380 aaPredicted RBP6.74□□□□□ -1.33
VPS29-212ENST00000621131 BLOC1S1P78537 153 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 ATP8B2P98198 1209 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 MTM1Q13496 603 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 GPR149Q86SP6 731 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 DDX42Q86XP3 938 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS29-212ENST00000621131 ZGPATQ8N5A5 531 aaKnown RBP6.74□□□□□ -1.33
VPS29-212ENST00000621131 CCHCR1Q8TD31 782 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 DPF2Q92785 391 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 BOD1Q96IK1 185 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 ZSWIM1Q9BR11 485 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 REXO4Q9GZR2 422 aaKnown RBP6.74□□□□□ -1.33
VPS29-212ENST00000621131 RIOX1Q9H6W3 641 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 RNF181Q9P0P0 153 aa6.74□□□□□ -1.33
VPS29-212ENST00000621131 TTBK1Q5TCY1 1321 aaPredicted RBP6.74□□□□□ -1.33
VPS29-212ENST00000621131 CCDC18Q5T9S5 1454 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 KIAA0556O60303 1618 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 ZAR1LA6NP61 321 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 TEX33O43247 280 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 TYRP1P17643 537 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 MPLP40238 635 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 WASP42768 502 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 CLK3P49761 638 aaKnown RBP6.73□□□□□ -1.33
VPS29-212ENST00000621131 MXRA7P84157 204 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 PRIMA1Q86XR5 153 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 CNTD1Q8N815 330 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 NRG4Q8WWG1 115 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 CAVIN3Q969G5 261 aa6.73□□□□□ -1.33
VPS29-212ENST00000621131 ALOXE3Q9BYJ1 711 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms