RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RFFLQ8WZ73 363 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 TAS2R14Q9NYV8 317 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 PCNTO95613 3336 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 TTLL13PA6NNM8 815 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 GTF2H1P32780 548 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 SLC8A3P57103 927 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 PTENP60484 403 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 ARHGEF6Q15052 776 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 CCDC105Q8IYK2 499 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 RNF10Q8N5U6 811 aaKnown RBP16.8■□□□□ 0.28
CPSF1-213ENST00000620219 BEST2Q8NFU1 509 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 FAM81BQ96LP2 452 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 CDT1Q9H211 546 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 ALDH1A1P00352 501 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 RTP1P59025 263 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 TDRD10Q5VZ19 366 aaKnown RBP16.8■□□□□ 0.28
CPSF1-213ENST00000620219 NOTUMQ6P988 496 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 MAATS1Q7Z4T9 603 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 TREHO43280 583 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 XPOTO43592 962 aaKnown RBP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 CSPG5O95196 566 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PRKAR2AP13861 404 aaKnown RBP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 CDK17Q00537 523 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PRKCZQ05513 592 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PSMD6Q15008 389 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 OR6B2Q6IFH4 312 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 CCDC62Q6P9F0 684 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 MMS22LQ6ZRQ5 1243 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 ENOSF1Q7L5Y1 443 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 TAB3Q8N5C8 712 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 FAM149B1Q96BN6 582 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 MINDY3Q9H8M7 445 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 LACTBL1A8MY62 500 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 FGGP02679 453 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 GUCY2DQ02846 1103 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 RNASELQ05823 741 aaKnown RBP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 GRB14Q14449 540 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 OLFML2BQ68BL8 750 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 SLC39A4Q6P5W5 647 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 SND1Q7KZF4 910 aaKnown RBP eCLIP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 ABRAQ8N0Z2 381 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 HPDLQ96IR7 371 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 FAM49BQ9NUQ9 324 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 OGFRQ9NZT2 677 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PPP1R37O75864 691 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 CDO1Q16878 200 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 TAPT1Q6NXT6 567 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 IRF2BP2Q7Z5L9 587 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 BRSK2Q8IWQ3 736 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 RHOT2Q8IXI1 618 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 NTPCRQ9BSD7 190 aaKnown RBP16.79■□□□□ 0.28
CPSF1-213ENST00000620219 NIF3L1Q9GZT8 377 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 TMEM134Q9H6X4 195 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 MORF4L1Q9UBU8 362 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PTPN22Q9Y2R2 807 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 PCDHB2Q9Y5E7 798 aa16.79■□□□□ 0.28
CPSF1-213ENST00000620219 ARF4P18085 180 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 SCP2P22307 547 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 SNX1Q13596 522 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 TMEM35BQ8NCS4 154 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 PLEKHO2Q8TD55 490 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 GLT1D1Q96MS3 346 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 A0A0B4J269 797 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 M0QYV0 167 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 PDE2AO00408 941 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 PALB2Q86YC2 1186 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 POLIQ9UNA4 740 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 DNAJC25-GNG10A0A024R161 153 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 RTN2O75298 545 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 PAN2Q504Q3 1202 aaKnown RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 FOXR2Q6PJQ5 311 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 CYFIP2Q96F07 1278 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 ANO9A1A5B4 782 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 A8MXQ7 604 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 DNAJC21Q5F1R6 531 aaKnown RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 JADE1Q6IE81 842 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 CC2D1AQ6P1N0 951 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 DSTYKQ6XUX3 929 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 NOP9Q86U38 636 aaKnown RBP16.78■□□□□ 0.28
CPSF1-213ENST00000620219 HEMGNQ9BXL5 484 aa16.78■□□□□ 0.28
CPSF1-213ENST00000620219 BUB1BO60566 1050 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-213ENST00000620219 ATG7O95352 703 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 NFICP08651 508 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 HNRNPH3P31942 346 aaKnown RBP16.77■□□□□ 0.28
CPSF1-213ENST00000620219 CCDC26Q8TAB7 109 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-213ENST00000620219 LRRC1Q9BTT6 524 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 ZCCHC17Q9NP64 241 aaKnown RBP16.77■□□□□ 0.28
CPSF1-213ENST00000620219 GOLGA6L10A6NI86 522 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 RGS7P49802 495 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 AP3M2P53677 418 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 IFFO1Q0D2I5 559 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 SPATA4Q8NEY3 305 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 CD99L2Q8TCZ2 262 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 AFAP1L1Q8TED9 768 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 ST6GALNAC4Q9H4F1 302 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 DPP3Q9NY33 737 aa16.77■□□□□ 0.28
CPSF1-213ENST00000620219 ARFGEF1Q9Y6D6 1849 aa16.77■□□□□ 0.27
CPSF1-213ENST00000620219 CA12O43570 354 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms