RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 SF3A3Q12874 501 aaKnown RBP eCLIP14.72□□□□□ -0.05
CIITA-213ENST00000618327 NYAP1Q6ZVC0 841 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 TAS1R2Q8TE23 839 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 SETD4Q9NVD3 440 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 WDR35Q9P2L0 1181 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 PLCH1Q4KWH8 1693 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 NUP98P52948 1817 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 GNGT1P63211 74 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 ACVR2BQ13705 512 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 TRAPPC12Q8WVT3 735 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 CGRRF1Q99675 332 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 TACO1Q9BSH4 297 aaKnown RBP14.72□□□□□ -0.05
CIITA-213ENST00000618327 TAF1DQ9H5J8 278 aaPredicted RBP14.72□□□□□ -0.05
CIITA-213ENST00000618327 NFASCO94856 1347 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 TYW5A2RUC4 315 aaKnown RBP14.72□□□□□ -0.05
CIITA-213ENST00000618327 LRRC10BA6NIK2 292 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 CASQ2O14958 399 aaPredicted RBP14.72□□□□□ -0.05
CIITA-213ENST00000618327 ZNF185O15231 689 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 ZC3H11AO75152 810 aaKnown RBP eCLIP14.72□□□□□ -0.05
CIITA-213ENST00000618327 LIG3P49916 1009 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 NPY5RQ15761 445 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 SV2AQ7L0J3 742 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.72□□□□□ -0.05
CIITA-213ENST00000618327 TBC1D31Q96DN5 1066 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 RIPK3Q9Y572 518 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 USP54Q70EL1 1684 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 PDGFRBP09619 1106 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 CHRNA3P32297 505 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 BBS5Q8N3I7 341 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 SLC35C1Q96A29 364 aa14.72□□□□□ -0.05
CIITA-213ENST00000618327 DDX56Q9NY93 547 aaKnown RBP14.72□□□□□ -0.05
CIITA-213ENST00000618327 CASP5P51878 434 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 KCNA1Q09470 495 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 GRIK4Q16099 956 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 TRAPPC11Q7Z392 1133 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 C4BP0C0L5 1744 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 TADA3O75528 432 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 CELF3Q5SZQ8 465 aaKnown RBP14.71□□□□□ -0.05
CIITA-213ENST00000618327 GPAT2Q6NUI2 795 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 C7orf43Q8WVR3 580 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 SOCS4Q8WXH5 440 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 CDKL2Q92772 493 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 EPC1Q9H2F5 836 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 VAV3Q9UKW4 847 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 INTUQ9ULD6 942 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 UBQLN1Q9UMX0 589 aaKnown RBP14.71□□□□□ -0.05
CIITA-213ENST00000618327 SNED1Q8TER0 1413 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 SPATA31C2B4DYI2 1134 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 ADCY3O60266 1144 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 CSDE1O75534 798 aaKnown RBP14.71□□□□□ -0.05
CIITA-213ENST00000618327 STAG3L1P0CL83 205 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 THPOP40225 353 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 INHBEP58166 350 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 ECM1Q16610 540 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 ANKRD20A3Q5VUR7 823 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 UPF1Q92900 1129 aaKnown RBP eCLIP14.71□□□□□ -0.05
CIITA-213ENST00000618327 HEY1Q9Y5J3 304 aa14.71□□□□□ -0.05
CIITA-213ENST00000618327 TRAPPC3O43617 180 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 RNF40O75150 1001 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 LCP1P13796 627 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 RGS7P49802 495 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 ITGB3BPQ13352 177 aaPredicted RBP14.71□□□□□ -0.06
CIITA-213ENST00000618327 SV2CQ496J9 727 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 HYIQ5T013 277 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 IQSEC1Q6DN90 963 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 LBX2Q6XYB7 198 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 MAP4K3Q8IVH8 894 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 CD302Q8IX05 232 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 CEP120Q8N960 986 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 SPATA20Q8TB22 786 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 DPP3Q9NY33 737 aa14.71□□□□□ -0.06
CIITA-213ENST00000618327 CPSF3Q9UKF6 684 aaKnown RBP14.71□□□□□ -0.06
CIITA-213ENST00000618327 ALS2CLQ60I27 953 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 RWDD4Q6NW29 188 aaKnown RBP14.7□□□□□ -0.06
CIITA-213ENST00000618327 PDIK1LQ8N165 341 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 TINF2Q9BSI4 451 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 SLITRK6Q9H5Y7 841 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 AFG3L2Q9Y4W6 797 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 ESYT3A0FGR9 886 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 PIK3R2O00459 728 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 GMNNO75496 209 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 INHBAP08476 426 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 GLRA4Q5JXX5 417 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 GLB1LQ6UWU2 654 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 TLK2Q86UE8 772 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 DNAAF3Q8N9W5 541 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 CPB2Q96IY4 423 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 ARHGAP20Q9P2F6 1191 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 F8VZ95 297 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 TXNDC9O14530 226 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 CPP00450 1065 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 SRGAP2BP0DMP2 458 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 RASSF2P50749 326 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 BBS9Q3SYG4 887 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 GBP7Q8N8V2 638 aaPredicted RBP14.7□□□□□ -0.06
CIITA-213ENST00000618327 COPS5Q92905 334 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 INPP4AQ96PE3 977 aaPredicted RBP14.7□□□□□ -0.06
CIITA-213ENST00000618327 NUF2Q9BZD4 464 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 TMEM117Q9H0C3 514 aa14.7□□□□□ -0.06
CIITA-213ENST00000618327 KLK14Q9P0G3 267 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms