RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CTSHP09668 335 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 CCDC172P0C7W6 258 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 FERP16591 822 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 PAX3P23760 479 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 CD52P31358 61 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 NCOA4Q13772 614 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 HGSNATQ68CP4 663 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 IRF2BP2Q7Z5L9 587 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 CDR2LQ86X02 465 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 TRIM6Q9C030 488 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 XYLT2Q9H1B5 865 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 TSPYL2Q9H2G4 693 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 NXF3Q9H4D5 531 aaKnown RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 SNTG2Q9NY99 539 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 AJAP1Q9UKB5 411 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 RBAK-RBAKDNI3L0D1 243 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 RECQL4O94761 1208 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 NFICP08651 508 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 TMEM191BP0C7N4 346 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 SOX5P35711 763 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 STAT1P42224 750 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 PIK3CAP42336 1068 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 ASTE1Q2TB18 679 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 WDR44Q5JSH3 913 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 RRAGAQ7L523 313 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 ARHGEF19Q8IW93 802 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 FAM71AQ8IYT1 594 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 LRRC52Q8N7C0 313 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 PGBD4Q96DM1 585 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 MTMR12Q9C0I1 747 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 RNF216Q9NWF9 866 aaPredicted RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 SIX4Q9UIU6 781 aa12.65□□□□□ -0.38
PDPN-211ENST00000617617 UBQLN1Q9UMX0 589 aaKnown RBP12.65□□□□□ -0.38
PDPN-211ENST00000617617 PCNTO95613 3336 aa12.65□□□□□ -0.39
PDPN-211ENST00000617617 TTC3P53804 2025 aa12.65□□□□□ -0.39
PDPN-211ENST00000617617 ANO9A1A5B4 782 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 FAM163BP0C2L3 166 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 GHRP10912 638 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 LRPAP1P30533 357 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 TWF2Q6IBS0 349 aaKnown RBP12.64□□□□□ -0.39
PDPN-211ENST00000617617 C1orf127Q8N9H9 656 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 CPLX3Q8WVH0 158 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 PPP1R10Q96QC0 940 aaKnown RBP12.64□□□□□ -0.39
PDPN-211ENST00000617617 SYT11Q9BT88 431 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 C9IYK1 514 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 MGEA5O60502 916 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 KREMEN1Q96MU8 473 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 TMEM106CQ9BVX2 250 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 BCO2Q9BYV7 579 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 NENFQ9UMX5 172 aa12.64□□□□□ -0.39
PDPN-211ENST00000617617 KIAA0355O15063 1070 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 CCP110O43303 1012 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 ZNF500O60304 480 aaPredicted RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 NBNO60934 754 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 RBP5P82980 135 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 GOLGA8FQ08AF8 430 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 GOLGA8DPQ0D2H9 430 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 DRAP1Q14919 205 aaPredicted RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 TRIM60Q495X7 471 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 E4F1Q66K89 784 aaPredicted RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 LIMS2Q7Z4I7 341 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 NECAB2Q7Z6G3 386 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 TTC39CQ8N584 583 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 BEST2Q8NFU1 509 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 OSBPL7Q9BZF2 842 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 SPTLC3Q9NUV7 552 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 SLC38A7Q9NVC3 462 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 DPP3Q9NY33 737 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 PTPRSQ13332 1948 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 EIF3CLB5ME19 914 aaKnown RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 ITGA4P13612 1032 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 ATF7P17544 494 aaPredicted RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 NAB2Q15742 525 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 ASIC2Q16515 512 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 ECHDC2Q86YB7 292 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 ZMAT2Q96NC0 199 aaKnown RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 EIF3CQ99613 913 aaKnown RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 IFIH1Q9BYX4 1025 aaKnown RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 MCOLN1Q9GZU1 580 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 APOBEC3GQ9HC16 384 aaKnown RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 UBE2TQ9NPD8 197 aaPredicted RBP12.63□□□□□ -0.39
PDPN-211ENST00000617617 PYCARDQ9ULZ3 195 aa12.63□□□□□ -0.39
PDPN-211ENST00000617617 SMIM28A0A1B0GU29 152 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 PIRO00625 290 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 ACO1P21399 889 aaKnown RBP12.62□□□□□ -0.39
PDPN-211ENST00000617617 OSTNP61366 133 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 NOP14P78316 857 aaKnown RBP12.62□□□□□ -0.39
PDPN-211ENST00000617617 TFAMQ00059 246 aaKnown RBP12.62□□□□□ -0.39
PDPN-211ENST00000617617 APBA1Q02410 837 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 TLE2Q04725 743 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 BIRC3Q13489 604 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 CUL2Q13617 745 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 SLC24A5Q71RS6 500 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 CRIPAKQ8N1N5 446 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 DIS3LQ8TF46 1054 aaKnown RBP12.62□□□□□ -0.39
PDPN-211ENST00000617617 UBE2Q2Q8WVN8 375 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 KIF12Q96FN5 646 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 ZNF830Q96NB3 372 aaPredicted RBP12.62□□□□□ -0.39
PDPN-211ENST00000617617 SPAG5Q96R06 1193 aa12.62□□□□□ -0.39
PDPN-211ENST00000617617 IMPG2Q9BZV3 1241 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms