RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 MTRRQ9UBK8 725 aa13.26□□□□□ -0.29
LIG1-217ENST00000599165 FBXW11Q9UKB1 542 aa13.26□□□□□ -0.29
LIG1-217ENST00000599165 CPSF3Q9UKF6 684 aaKnown RBP13.26□□□□□ -0.29
LIG1-217ENST00000599165 KMT2EQ8IZD2 1858 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 CCDC195A0A1B0GUA6 201 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 LACTBL1A8MY62 500 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 PRR33A8MZF0 331 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 PPEF2O14830 753 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 OGTO15294 1046 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 CLTAP09496 248 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 SCP2P22307 547 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 STAT6P42226 847 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 WNT7BP56706 349 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 ZXDAP98168 799 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 MRPL58Q14197 206 aaKnown RBP13.25□□□□□ -0.29
LIG1-217ENST00000599165 ATAT1Q5SQI0 421 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 CRELD2Q6UXH1 353 aaPredicted RBP13.25□□□□□ -0.29
LIG1-217ENST00000599165 CCDC73Q6ZRK6 1079 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 SV2BQ7L1I2 683 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 GLIS3Q8NEA6 775 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 ZSWIM2Q8NEG5 633 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 HDAC7Q8WUI4 952 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 STAMQ92783 540 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 EDAQ92838 391 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 BICD1Q96G01 975 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 ZNF396Q96N95 335 aaPredicted RBP13.25□□□□□ -0.29
LIG1-217ENST00000599165 PLEKHA5Q9HAU0 1116 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 SLC38A7Q9NVC3 462 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 TBC1D7Q9P0N9 293 aa13.25□□□□□ -0.29
LIG1-217ENST00000599165 ZMYND10O75800 440 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 LRPAP1P30533 357 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 TXLNAP40222 546 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 DNM1Q05193 864 aaKnown RBP13.24□□□□□ -0.29
LIG1-217ENST00000599165 ELAVL2Q12926 359 aaKnown RBP13.24□□□□□ -0.29
LIG1-217ENST00000599165 RAB33AQ14088 237 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 PTPN21Q16825 1174 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 HFE2Q6ZVN8 426 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 ZDHHC14Q8IZN3 488 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 KREMEN2Q8NCW0 462 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 HPS3Q969F9 1004 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 ASIC4Q96FT7 647 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 PLEKHA4Q9H4M7 779 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 TSHZ2Q9NRE2 1034 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 OLFML3Q9NRN5 406 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 KBTBD4Q9NVX7 518 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 USTQ9Y2C2 406 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 BACE2Q9Y5Z0 518 aa13.24□□□□□ -0.29
LIG1-217ENST00000599165 CUTAO60888 179 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 ASGR2P07307 311 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 NFICP08651 508 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 GAP43P17677 238 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 RPL9P32969 192 aaKnown RBP13.23□□□□□ -0.29
LIG1-217ENST00000599165 OR1D2P34982 312 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 AARSP49588 968 aaKnown RBP eCLIP13.23□□□□□ -0.29
LIG1-217ENST00000599165 ACOT2P49753 483 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 CREMQ03060 361 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 VARS2Q5ST30 1063 aaKnown RBP13.23□□□□□ -0.29
LIG1-217ENST00000599165 SLC8B1Q6J4K2 584 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 TRIM67Q6ZTA4 783 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 HVCN1Q96D96 273 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 SUSD3Q96L08 255 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 MSTO1Q9BUK6 570 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 WDR6Q9NNW5 1121 aaKnown RBP13.23□□□□□ -0.29
LIG1-217ENST00000599165 ZDHHC7Q9NXF8 308 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 SEL1LQ9UBV2 794 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 PCDHA7Q9UN72 937 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 CDY1Q9Y6F8 540 aa13.23□□□□□ -0.29
LIG1-217ENST00000599165 CLUHO75153 1309 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 SPTLC1O15269 473 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 CYP3A5P20815 502 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 CASP1P29466 404 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 HOXD13P35453 343 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 MATR3P43243 847 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIG1-217ENST00000599165 ROR1Q01973 937 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 EHHADHQ08426 723 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 L1TD1Q5T7N2 865 aaKnown RBP13.22□□□□□ -0.29
LIG1-217ENST00000599165 SPATA1Q5VX52 437 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 SCARA3Q6AZY7 606 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 JADE1Q6IE81 842 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 CCDC149Q6ZUS6 474 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 EFCAB13Q8IY85 973 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 TDRD5Q8NAT2 981 aaKnown RBP13.22□□□□□ -0.29
LIG1-217ENST00000599165 SMG7Q92540 1137 aaKnown RBP13.22□□□□□ -0.29
LIG1-217ENST00000599165 DHX58Q96C10 678 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 KIF12Q96FN5 646 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 MYADMQ96S97 322 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 PRKD2Q9BZL6 878 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 TRIM9Q9C026 710 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 TNMDQ9H2S6 317 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 MRPL44Q9H9J2 332 aaKnown RBP13.22□□□□□ -0.29
LIG1-217ENST00000599165 LIMD1Q9UGP4 676 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 RCOR1Q9UKL0 485 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 NR2E1Q9Y466 385 aa13.22□□□□□ -0.29
LIG1-217ENST00000599165 WDR27A2RRH5 827 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 M0QZQ0 153 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 SYN3O14994 580 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 ABLIM3O94929 683 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 VNN2O95498 520 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 C8AP07357 584 aa13.21□□□□□ -0.29
LIG1-217ENST00000599165 HSP90AA1P07900 732 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms