RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PIGRP01833 764 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 ADRB2P07550 413 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 LONP1P36776 959 aaKnown RBP11.46□□□□□ -0.57
LIG1-213ENST00000596672 UBA7P41226 1012 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 CEBPZQ03701 1054 aaKnown RBP11.46□□□□□ -0.57
LIG1-213ENST00000596672 MTMR3Q13615 1198 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 ENOX2Q16206 610 aaKnown RBP11.46□□□□□ -0.57
LIG1-213ENST00000596672 ZPBP2Q6X784 338 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 OTOP3Q7RTS5 596 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 ALYREFQ86V81 257 aaKnown RBP11.46□□□□□ -0.57
LIG1-213ENST00000596672 SLC44A3Q8N4M1 653 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 DNAJC19Q96DA6 116 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 AK8Q96MA6 479 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 TCHPQ9BT92 498 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 TIPINQ9BVW5 301 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 STRA6Q9BX79 667 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 CCSER1Q9C0I3 900 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 FAM86C1Q9NVL1 165 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 ZDHHC7Q9NXF8 308 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 ANKFY1Q9P2R3 1169 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 EPS15L1Q9UBC2 864 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 DNMT3BQ9UBC3 853 aaKnown RBP11.46□□□□□ -0.57
LIG1-213ENST00000596672 TBX20Q9UMR3 447 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 CDY1Q9Y6F8 540 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 FRYLO94915 3013 aa11.46□□□□□ -0.58
LIG1-213ENST00000596672 OTOGLQ3ZCN5 2332 aa11.46□□□□□ -0.58
LIG1-213ENST00000596672 WDR27A2RRH5 827 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 LACTBL1A8MY62 500 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 ANHXE9PGG2 379 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 SPTLC1O15269 473 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 PPP1R37O75864 691 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 ABLIM3O94929 683 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 C8AP07357 584 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 LAMP2P13473 410 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 ANP32AP39687 249 aaKnown RBP11.45□□□□□ -0.58
LIG1-213ENST00000596672 ROR1Q01973 937 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 HTR4Q13639 388 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 NOLC1Q14978 699 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIG1-213ENST00000596672 SLC5A9Q2M3M2 681 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 VARS2Q5ST30 1063 aaKnown RBP11.45□□□□□ -0.58
LIG1-213ENST00000596672 AXDND1Q5T1B0 1012 aaPredicted RBP11.45□□□□□ -0.58
LIG1-213ENST00000596672 CRELD2Q6UXH1 353 aaPredicted RBP11.45□□□□□ -0.58
LIG1-213ENST00000596672 KCTD17Q8N5Z5 321 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 SLC7A14Q8TBB6 771 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 FGF14Q92915 247 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 CRISPLD1Q9H336 500 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 SRPRBQ9Y5M8 271 aaKnown RBP11.45□□□□□ -0.58
LIG1-213ENST00000596672 BACE2Q9Y5Z0 518 aa11.45□□□□□ -0.58
LIG1-213ENST00000596672 TSC2P49815 1807 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 A0A0B4J269 797 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 ADSSP30520 456 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 GBP2P32456 591 aaPredicted RBP11.44□□□□□ -0.58
LIG1-213ENST00000596672 DDIT3P35638 169 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 CCR2P41597 374 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 CASP5P51878 434 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 GTF2BQ00403 316 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 TDGQ13569 410 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 SLC8B1Q6J4K2 584 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 PARM1Q6UWI2 310 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 GET4Q7L5D6 327 aaPredicted RBP11.44□□□□□ -0.58
LIG1-213ENST00000596672 DYMQ7RTS9 669 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 UBALD2Q8IYN6 164 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 PLCD3Q8N3E9 789 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 MYCT1Q8N699 235 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 GLIS3Q8NEA6 775 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 LARP4BQ92615 738 aaKnown RBP11.44□□□□□ -0.58
LIG1-213ENST00000596672 CDK5RAP3Q96JB5 506 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 SUSD3Q96L08 255 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 UROC1Q96N76 676 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 ANP32EQ9BTT0 268 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 PANK2Q9BZ23 570 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 KCND2Q9NZV8 630 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 FBXL5Q9UKA1 691 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 ODF2LQ9ULJ1 636 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 DUSP12Q9UNI6 340 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 TIMM13Q9Y5L4 95 aaPredicted RBP11.44□□□□□ -0.58
LIG1-213ENST00000596672 CEP250Q9BV73 2442 aa11.44□□□□□ -0.58
LIG1-213ENST00000596672 NCANO14594 1321 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SHISA7A6NL88 538 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SPDYE4A6NLX3 237 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 K7ENM7 598 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 CLDN3O15551 220 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SLC26A4O43511 780 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 TRAK2O60296 914 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 MOSPD3O75425 235 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 CLTAP09496 248 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 OR4Q2P0C623 313 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 LRPAP1P30533 357 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 AARSP49588 968 aaKnown RBP eCLIP11.43□□□□□ -0.584e-6■■□□□ 13.1
LIG1-213ENST00000596672 CDR1P51861 262 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SMTNP53814 917 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 YARSP54577 528 aaKnown RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 ELAVL2Q12926 359 aaKnown RBP11.43□□□□□ -0.58
LIG1-213ENST00000596672 STRN3Q13033 797 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 PKP1Q13835 747 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SLC39A14Q15043 492 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 CYP26C1Q6V0L0 522 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 ZNF720Q7Z2F6 126 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 SFR1Q86XK3 245 aa11.43□□□□□ -0.58
LIG1-213ENST00000596672 MAP4K3Q8IVH8 894 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms