RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 GTF2BQ00403 316 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 RAB33AQ14088 237 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 SLC39A14Q15043 492 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 ENOX2Q16206 610 aaKnown RBP14.24□□□□□ -0.13
LIG1-212ENST00000596549 PDXDC1Q6P996 788 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 ELMSAN1Q6PJG2 1045 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 CYP26C1Q6V0L0 522 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 OTOP3Q7RTS5 596 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 DYMQ7RTS9 669 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 PLCD3Q8N3E9 789 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 PBXIP1Q96AQ6 731 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 DNAJC19Q96DA6 116 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 MYADMQ96S97 322 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 ZSCAN16Q9H4T2 348 aaPredicted RBP14.24□□□□□ -0.13
LIG1-212ENST00000596549 LIMD1Q9UGP4 676 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 A0A0B4J269 797 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 ANKRD63C9JTQ0 380 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 OGTO15294 1046 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 HOXA9P31269 272 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 OR1D2P34982 312 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 MATR3P43243 847 aaKnown RBP eCLIP14.23□□□□□ -0.13
LIG1-212ENST00000596549 ROR1Q01973 937 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 ZBTB6Q15916 424 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 VARS2Q5ST30 1063 aaKnown RBP14.23□□□□□ -0.13
LIG1-212ENST00000596549 ANKS3Q6ZW76 656 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 GET4Q7L5D6 327 aaPredicted RBP14.23□□□□□ -0.13
LIG1-212ENST00000596549 FBXL6Q8N531 539 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 LINC00301Q8NCQ3 95 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 SLC7A14Q8TBB6 771 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 DDX12PQ92771 950 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 ACSF2Q96CM8 615 aaPredicted RBP14.23□□□□□ -0.13
LIG1-212ENST00000596549 ST6GALNAC4Q9H4F1 302 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 CCDC39Q9UFE4 941 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 BACE2Q9Y5Z0 518 aa14.23□□□□□ -0.13
LIG1-212ENST00000596549 WDR27A2RRH5 827 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 SYN3O14994 580 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 TRAPPC3O43617 180 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 TBC1D4O60343 1298 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 ADRB2P07550 413 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 CLTAP09496 248 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 SCP2P22307 547 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 LRPAP1P30533 357 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 GBP2P32456 591 aaPredicted RBP14.22□□□□□ -0.13
LIG1-212ENST00000596549 TXLNAP40222 546 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 GUCY2FP51841 1108 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 NTHL1P78549 312 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 PPP2R3AQ06190 1150 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 LIN9Q5TKA1 542 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 RRAGBQ5VZM2 374 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 SLC8B1Q6J4K2 584 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 UBALD2Q8IYN6 164 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 KRI1Q8N9T8 703 aaKnown RBP14.22□□□□□ -0.13
LIG1-212ENST00000596549 PRSS33Q8NF86 280 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 FAM122AQ96E09 287 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 KIF12Q96FN5 646 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 SUSD3Q96L08 255 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 MFSD14AQ96MC6 490 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 STRA6Q9BX79 667 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 FGFBP2Q9BYJ0 223 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 PLEKHA5Q9HAU0 1116 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 KCNK12Q9HB15 430 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 PIDD1Q9HB75 910 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 CPSF3Q9UKF6 684 aaKnown RBP14.22□□□□□ -0.13
LIG1-212ENST00000596549 OBSL1O75147 1896 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 MUC6Q6W4X9 2439 aa14.22□□□□□ -0.13
LIG1-212ENST00000596549 FRMD3A2A2Y4 597 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 LACTBL1A8MY62 500 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 PPEF2O14830 753 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 CCL16O15467 120 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 HNRNPA1P09651 372 aaKnown RBP eCLIP14.21□□□□□ -0.13
LIG1-212ENST00000596549 RPL9P32969 192 aaKnown RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 MCM4P33991 863 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 STAT6P42226 847 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 AARSP49588 968 aaKnown RBP eCLIP14.21□□□□□ -0.13
LIG1-212ENST00000596549 CASP5P51878 434 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 KCNA1Q09470 495 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 PKP1Q13835 747 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 MRPL58Q14197 206 aaKnown RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 PPM1LQ5SGD2 360 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 AXDND1Q5T1B0 1012 aaPredicted RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 IER5LQ5T953 404 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 FOXD4L5Q5VV16 416 aaPredicted RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 GRASPQ7Z6J2 395 aaPredicted RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 HSCBQ8IWL3 235 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 RSAD2Q8WXG1 361 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 FOXD4L4Q8WXT5 416 aaPredicted RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 STAMQ92783 540 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 MSTO1Q9BUK6 570 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 HCFC1R1Q9NWW0 138 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 EPS15L1Q9UBC2 864 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 UBQLN1Q9UMX0 589 aaKnown RBP14.21□□□□□ -0.13
LIG1-212ENST00000596549 DUSP12Q9UNI6 340 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 NUB1Q9Y5A7 615 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 GTF3C3Q9Y5Q9 886 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 STYXL1Q9Y6J8 313 aa14.21□□□□□ -0.13
LIG1-212ENST00000596549 NUP210Q8TEM1 1887 aaPredicted RBP14.21□□□□□ -0.14
LIG1-212ENST00000596549 PATJQ8NI35 1801 aa14.2□□□□□ -0.14
LIG1-212ENST00000596549 MIA3Q5JRA6 1907 aa14.2□□□□□ -0.14
LIG1-212ENST00000596549 NARSO43776 548 aaKnown RBP14.2□□□□□ -0.14
LIG1-212ENST00000596549 NFICP08651 508 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms