RNA–Protein interactions for RNA: ENST00000578547.1

IFT20-207, Transcript of intraflagellar transport 20, humanhuman

TSL 1 (best)

Gene IFT20, Length 962 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT20-207ENST00000578547 KRT19P08727 400 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 MXI1P50539 228 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 MYL7Q01449 175 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 PPP3CAQ08209 521 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 MAN2A1Q16706 1144 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 DUOXA2Q1HG44 320 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 LRIT3Q3SXY7 679 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 SPOUT1Q5T280 376 aaKnown RBP13.12□□□□□ -0.31
IFT20-207ENST00000578547 ZNF280BQ86YH2 543 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 CMTR2Q8IYT2 770 aaKnown RBP13.12□□□□□ -0.31
IFT20-207ENST00000578547 CACTINQ8WUQ7 758 aaKnown RBP13.12□□□□□ -0.31
IFT20-207ENST00000578547 ZNF516Q92618 1163 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 RABGGTAQ92696 567 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 PBX4Q9BYU1 374 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 VPS16Q9H269 839 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 DPP3Q9NY33 737 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 KANSL3Q9P2N6 904 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 YBX2Q9Y2T7 364 aaKnown RBP13.12□□□□□ -0.31
IFT20-207ENST00000578547 PCDHA11Q9Y5I1 949 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 TRIP11Q15643 1979 aa13.12□□□□□ -0.31
IFT20-207ENST00000578547 FNDC1Q4ZHG4 1894 aaPredicted RBP13.12□□□□□ -0.31
IFT20-207ENST00000578547 TDRD15B5MCY1 1934 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 B4GALT3O60512 393 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 DDHD2O94830 711 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 ARHGEF15O94989 841 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 SERPINC1P01008 464 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 AFPP02771 609 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 ITGB3P05106 788 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 COPB1P53618 953 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 PLCB2Q00722 1185 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 ENPEPQ07075 957 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 KCNH2Q12809 1159 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 TUSC3Q13454 348 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 CBWD6Q4V339 395 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 CBWD3Q5JTY5 395 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 CBWD5Q5RIA9 395 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 TDRD10Q5VZ19 366 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 NT5DC4Q86YG4 428 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 RSPH1Q8WYR4 309 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 TSPAN18Q96SJ8 248 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 TMEM8AQ9HCN3 771 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 DNAJB4Q9UDY4 337 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 LIMA1Q9UHB6 759 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 MSRAQ9UJ68 235 aa13.11□□□□□ -0.31
IFT20-207ENST00000578547 MRPL42Q9Y6G3 142 aaKnown RBP13.11□□□□□ -0.31
IFT20-207ENST00000578547 POLR2BP30876 1174 aaKnown RBP13.1□□□□□ -0.31
IFT20-207ENST00000578547 GTF2H1P32780 548 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 PBX3P40426 434 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 PIK3CAP42336 1068 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 OR1G1P47890 313 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 FMO5P49326 533 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 AP3M2P53677 418 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 CLDN10P78369 228 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 SMAD3P84022 425 aaKnown RBP13.1□□□□□ -0.31
IFT20-207ENST00000578547 DSC1Q08554 894 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 NAB2Q15742 525 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 ZBTB6Q15916 424 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 VWA3BQ502W6 1294 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 MIIPQ5JXC2 388 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 KRT39Q6A163 491 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 SV2AQ7L0J3 742 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 TRAPPC11Q7Z392 1133 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 FIBCD1Q8N539 461 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 C1orf127Q8N9H9 656 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 PAAF1Q9BRP4 392 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 NKX2-4Q9H2Z4 354 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 NDST4Q9H3R1 872 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 CWH43Q9H720 699 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 NRDE2Q9H7Z3 1164 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.1□□□□□ -0.31
IFT20-207ENST00000578547 ITGA11Q9UKX5 1188 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 AGAP1Q9UPQ3 857 aa13.1□□□□□ -0.31
IFT20-207ENST00000578547 PRG3Q9Y2Y8 225 aaPredicted RBP13.1□□□□□ -0.31
IFT20-207ENST00000578547 R3HCC1Q9Y3T6 440 aaKnown RBP13.1□□□□□ -0.31
IFT20-207ENST00000578547 LINC01553A4QN01 128 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 SOX1O00570 391 aaPredicted RBP13.09□□□□□ -0.31
IFT20-207ENST00000578547 PODXLO00592 558 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 PPEF2O14830 753 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 N4BP1O75113 896 aaKnown RBP13.09□□□□□ -0.31
IFT20-207ENST00000578547 HLA-DRAP01903 254 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 C4BPAP04003 597 aaKnown RBP13.09□□□□□ -0.31
IFT20-207ENST00000578547 CA3P07451 260 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 LINC00271P0C7V0 271 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 CYP3A5P20815 502 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 SLC11A1P49279 550 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 CLCNKBP51801 687 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 BCAR1P56945 870 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 FANCCQ00597 558 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 TRPC3Q13507 836 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 NCOA4Q13772 614 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 RAB30Q15771 203 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 ZACNQ401N2 412 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 C9orf57Q5W0N0 161 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 SCARA3Q6AZY7 606 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 SPRED2Q7Z698 418 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 COLGALT2Q8IYK4 626 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 TAS1R2Q8TE23 839 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 HASPINQ8TF76 798 aa13.09□□□□□ -0.31
IFT20-207ENST00000578547 ELMO3Q96BJ8 720 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms