RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 DAGLBQ8NCG7 672 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 TBC1D16Q8TBP0 767 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 CDHR1Q96JP9 859 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 FERD3LQ96RJ6 166 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 VTA1Q9NP79 307 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 FKBP14Q9NWM8 211 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 IL1RAPL1Q9NZN1 696 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 SCHIP1Q9P0W5 487 aaPredicted RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 VPS51Q9UID3 782 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 GTF3C4Q9UKN8 822 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 EXOC7Q9UPT5 735 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 PCDHGA3Q9Y5H0 932 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 ARFGEF1Q9Y6D6 1849 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 PP2D1A8MPX8 630 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 H0YGN5 161 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 SEC24DO94855 1032 aaPredicted RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 ZBTB11O95625 1053 aaPredicted RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 SERPINB6P35237 376 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 CFAP221Q4G0U5 840 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 IZUMO2Q6UXV1 221 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 SEPT12Q8IYM1 358 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 RIN3Q8TB24 985 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 GIPC2Q8TF65 315 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 DPH5Q9H2P9 285 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 EHD1Q9H4M9 534 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 MLXIPQ9HAP2 919 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 LRRC4CQ9HCJ2 640 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 SH3GLB2Q9NR46 395 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 NFS1Q9Y697 457 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 CAPN6Q9Y6Q1 641 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 SRCAPQ6ZRS2 3230 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ADRA2BP18089 450 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 PRCPP42785 496 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 TRAPPC10P48553 1259 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 RASSF2P50749 326 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 GABPAQ06546 454 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 LPIN1Q14693 890 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 SUZ12Q15022 739 aaKnown RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 RASA2Q15283 850 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 WASHC2DQ5SRD0 308 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ZCCHC8Q6NZY4 707 aaKnown RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 Q6ZNX1 250 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 NUP93Q8N1F7 819 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 CENPTQ96BT3 561 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 C8orf48Q96LL4 319 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 BARHL2Q9NY43 387 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 PCDHA4Q9UN74 947 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 IKBKGQ9Y6K9 419 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 SMIM31A0A1B0GVY4 71 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 FUOMA2VDF0 154 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 KLRC4O43908 158 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 CES1P23141 567 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 MCM7P33993 719 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 BTDP43251 543 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 SLC34A1Q06495 639 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 MTMR3Q13615 1198 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 STK11Q15831 433 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 KBTBD2Q8IY47 623 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ALDH16A1Q8IZ83 802 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 BLIDQ8IZY5 108 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 PAF1Q8N7H5 531 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ATXN2LQ8WWM7 1075 aaKnown RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 TANGO6Q9C0B7 1094 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 LOC105371267A0A1B0GV96 52 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 E9PBE3 544 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 NKRFO15226 690 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLK3-226ENST00000569406 SERPINB2P05120 415 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 OCM2P0CE71 109 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 OCMP0CE72 109 aaPredicted RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 SLURP2P0DP57 97 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 CYLC1P35663 651 aaPredicted RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 CDK8P49336 464 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 PARP6Q2NL67 630 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 RFX8Q6ZV50 586 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 BBS5Q8N3I7 341 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 GIMAP1Q8WWP7 306 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 ERP27Q96DN0 273 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 GSDMAQ96QA5 445 aa11.47□□□□□ -0.57
CLK3-226ENST00000569406 DDX4Q9NQI0 724 aaKnown RBP11.47□□□□□ -0.57
CLK3-226ENST00000569406 PCP4L1A6NKN8 68 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 A6NL46 340 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 CHEK2O96017 543 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 TGFB3P10600 412 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 PMS1P54277 932 aaKnown RBP11.46□□□□□ -0.57
CLK3-226ENST00000569406 TWF2Q6IBS0 349 aaKnown RBP11.46□□□□□ -0.57
CLK3-226ENST00000569406 ANKRD13CQ8N6S4 541 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 PDZD8Q8NEN9 1154 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 COX4I2Q96KJ9 171 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 ZBED2Q9BTP6 218 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 LRWD1Q9UFC0 647 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 PLIN4Q96Q06 1357 aa11.46□□□□□ -0.57
CLK3-226ENST00000569406 IGKV6D-41A0A0C4DH26 115 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 TBX10O75333 385 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 FECHP22830 423 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 GTF2H1P32780 548 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 ETFBP38117 255 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 CD300CQ08708 224 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 RPGRQ92834 1020 aaKnown RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 TRIM47Q96LD4 638 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms