RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PABPC1LQ4VXU2 614 aaKnown RBP20.47■□□□□ 0.87
CLN3-218ENST00000565688 SLC8B1Q6J4K2 584 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 ZNF461Q8TAF7 563 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 TBC1D17Q9HA65 648 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 LARSQ9P2J5 1176 aaKnown RBP20.47■□□□□ 0.87
CLN3-218ENST00000565688 ANKFY1Q9P2R3 1169 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 NUB1Q9Y5A7 615 aa20.47■□□□□ 0.87
CLN3-218ENST00000565688 CLDN3O15551 220 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 SCP2P22307 547 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 ANGPT1Q15389 498 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 TMEM119Q4V9L6 283 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 VARS2Q5ST30 1063 aaKnown RBP20.46■□□□□ 0.87
CLN3-218ENST00000565688 PARM1Q6UWI2 310 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 FGF14Q92915 247 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 SHDQ96IW2 340 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 ZBTB45Q96K62 511 aaPredicted RBP20.46■□□□□ 0.87
CLN3-218ENST00000565688 PLIN2Q99541 437 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 SMC3Q9UQE7 1217 aa20.46■□□□□ 0.87
CLN3-218ENST00000565688 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.46■□□□□ 0.87
CLN3-218ENST00000565688 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.46■□□□□ 0.87
CLN3-218ENST00000565688 ABLIM3O94929 683 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 ELF1P32519 619 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 ROR1Q01973 937 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 MCL1Q07820 350 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 ITFG1Q8TB96 612 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 C18orf25Q96B23 403 aaPredicted RBP20.45■□□□□ 0.86
CLN3-218ENST00000565688 PLEKHA5Q9HAU0 1116 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 DNMT3BQ9UBC3 853 aaKnown RBP20.45■□□□□ 0.86
CLN3-218ENST00000565688 ODF2LQ9ULJ1 636 aa20.45■□□□□ 0.86
CLN3-218ENST00000565688 RIF1Q5UIP0 2472 aaKnown RBP20.44■□□□□ 0.86
CLN3-218ENST00000565688 ARHGEF37A1IGU5 675 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 PRR23AA6NEV1 266 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 PRRG1O14668 218 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 TBC1D4O60343 1298 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 BMP15O95972 392 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 LRG1P02750 347 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 UBA7P41226 1012 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 MRPL58Q14197 206 aaKnown RBP20.44■□□□□ 0.86
CLN3-218ENST00000565688 KYAT1Q16773 422 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 SLC10A6Q3KNW5 377 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 TPGS2Q68CL5 300 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 FRMD5Q7Z6J6 570 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 APPL2Q8NEU8 664 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 KCNN1Q92952 543 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 NKD2Q969F2 451 aaPredicted RBP20.44■□□□□ 0.86
CLN3-218ENST00000565688 BICD1Q96G01 975 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 CALML4Q96GE6 196 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 SUSD3Q96L08 255 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 AVENQ9NQS1 362 aaPredicted RBP20.44■□□□□ 0.86
CLN3-218ENST00000565688 HCFC1R1Q9NWW0 138 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 GDE1Q9NZC3 331 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 MRPS23Q9Y3D9 190 aaKnown RBP20.44■□□□□ 0.86
CLN3-218ENST00000565688 SIT1Q9Y3P8 196 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 CITO14578 2027 aa20.44■□□□□ 0.86
CLN3-218ENST00000565688 DOCK6Q96HP0 2047 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 MEFVO15553 781 aaPredicted RBP20.43■□□□□ 0.86
CLN3-218ENST00000565688 CD2BP2O95400 341 aaKnown RBP20.43■□□□□ 0.86
CLN3-218ENST00000565688 CLTAP09496 248 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 ATF2P15336 505 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 PTPN2P17706 415 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 MATR3P43243 847 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-218ENST00000565688 NCKAP1LP55160 1127 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 GPC5P78333 572 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 ARSHQ5FYA8 562 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 LARP1BQ659C4 914 aaKnown RBP20.43■□□□□ 0.86
CLN3-218ENST00000565688 ASCL5Q7RTU5 278 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 NPAS3Q8IXF0 933 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 TCEAL8Q8IYN2 117 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 RPP25Q9BUL9 199 aaKnown RBP20.43■□□□□ 0.86
CLN3-218ENST00000565688 MAFFQ9ULX9 164 aa20.43■□□□□ 0.86
CLN3-218ENST00000565688 NPHP3-ACAD11A0A0J9YXS1 232 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 WDR27A2RRH5 827 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 RHOP08100 348 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 MCM4P33991 863 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 STARD6P59095 220 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 PFKPQ01813 784 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 CTXN3Q4LDR2 81 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 ZNF280DQ6N043 979 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 HAUS6Q7Z4H7 955 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 BRAPQ7Z569 592 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 ST13P5Q8NFI4 369 aaPredicted RBP20.42■□□□□ 0.86
CLN3-218ENST00000565688 TBC1D32Q96NH3 1257 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 FBXL5Q9UKA1 691 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 MYH11P35749 1972 aa20.42■□□□□ 0.86
CLN3-218ENST00000565688 PTPRZ1P23471 2315 aaPredicted RBP20.42■□□□□ 0.86
CLN3-218ENST00000565688 CXCL8P10145 99 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 MARCKSP29966 332 aaPredicted RBP20.41■□□□□ 0.86
CLN3-218ENST00000565688 ABCD1P33897 745 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 ARPP19P56211 112 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 SEZ6Q53EL9 994 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 GPBP1Q86WP2 473 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 PJA1Q8NG27 643 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 TSPAN18Q96SJ8 248 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 REEP2Q9BRK0 252 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 OXCT2Q9BYC2 517 aaPredicted RBP20.41■□□□□ 0.86
CLN3-218ENST00000565688 CYP4F11Q9HBI6 524 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 TUBGCP4Q9UGJ1 667 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 PCDHB8Q9UN66 801 aa20.41■□□□□ 0.86
CLN3-218ENST00000565688 DMDP11532 3685 aa20.4■□□□□ 0.86
CLN3-218ENST00000565688 TTC26A0AVF1 554 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms