RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 C1orf53Q5VUE5 145 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 ALKAL1Q6UXT8 129 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 ANKRD33Q7Z3H0 272 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 TXLNBQ8N3L3 684 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 BEST2Q8NFU1 509 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 PGBD4Q96DM1 585 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 FAXDC2Q96IV6 333 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 CHP1Q99653 195 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 APOL6Q9BWW8 343 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 FTHL17Q9BXU8 183 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 MTMR12Q9C0I1 747 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 AGO3Q9H9G7 860 aaKnown RBP11.09□□□□□ -0.63
USP3-219ENST00000561326 NHEJ1Q9H9Q4 299 aaPredicted RBP11.09□□□□□ -0.63
USP3-219ENST00000561326 UBN1Q9NPG3 1134 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 LUC7LQ9NQ29 371 aaKnown RBP11.09□□□□□ -0.63
USP3-219ENST00000561326 FAM105AQ9NUU6 356 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 DPP3Q9NY33 737 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.09□□□□□ -0.63
USP3-219ENST00000561326 ITGA11Q9UKX5 1188 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 IPPQ9Y573 584 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 PTPRJQ12913 1337 aa11.09□□□□□ -0.63
USP3-219ENST00000561326 GOLGA6L9A6NEM1 432 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 SOWAHDA6NJG2 315 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 F8VZ95 297 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 ZNF500O60304 480 aaPredicted RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 PQBP1O60828 265 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 ZNF623O75123 536 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 RECQL4O94761 1208 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 NDUFA10O95299 355 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 ASS1P00966 412 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 CST3P01034 146 aaPredicted RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 NFICP08651 508 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 AKAP5P24588 427 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 USP8P40818 1118 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 ATN1P54259 1190 aaPredicted RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 BPIFB4P59827 614 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 YWHAEP62258 255 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 MAPK8IP2Q13387 824 aaPredicted RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 ZNF699Q32M78 642 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 TDRD12Q587J7 1177 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 GJB7Q6PEY0 223 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 LRRC8DQ7L1W4 858 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 IRF2BP2Q7Z5L9 587 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 MRPL10Q7Z7H8 261 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 ARHGEF19Q8IW93 802 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 EFCAB13Q8IY85 973 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 TATDN2Q93075 761 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 SNX27Q96L92 541 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 ADAM2Q99965 735 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 PI4K2AQ9BTU6 479 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 IFIH1Q9BYX4 1025 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 NXF3Q9H4D5 531 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 PRDM10Q9NQV6 1147 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 KCND1Q9NSA2 647 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 SLC38A7Q9NVC3 462 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 RNF216Q9NWF9 866 aaPredicted RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 CNTN3Q9P232 1028 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 UBQLN1Q9UMX0 589 aaKnown RBP11.08□□□□□ -0.64
USP3-219ENST00000561326 GIT1Q9Y2X7 761 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 HES2Q9Y543 173 aa11.08□□□□□ -0.64
USP3-219ENST00000561326 A0A0U1RQF3 1178 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 EIF3CLB5ME19 914 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 FOXN3O00409 490 aaPredicted RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 GFPT2O94808 682 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 EOMESO95936 686 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 ITGB3P05106 788 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 KCNE1P15382 129 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 ATF7P17544 494 aaPredicted RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 EIF4A3P38919 411 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 PRKCIP41743 596 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 MYL6P60660 151 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 NOP14P78316 857 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 TLE2Q04725 743 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 MYO1EQ12965 1108 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 DSC3Q14574 896 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 ZBTB6Q15916 424 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 XKR4Q5GH76 650 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 ZNF667Q5HYK9 610 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 NECAB2Q7Z6G3 386 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 CCAR2Q8N163 923 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 TTC39CQ8N584 583 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 SMG8Q8ND04 991 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 HELQQ8TDG4 1101 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 SEPT8Q92599 483 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 RPS6KC1Q96S38 1066 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 EIF3CQ99613 913 aaKnown RBP11.07□□□□□ -0.64
USP3-219ENST00000561326 C11orf49Q9H6J7 331 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.07□□□□□ -0.642e-22■■■■■ 279.5
USP3-219ENST00000561326 ARHGAP20Q9P2F6 1191 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 SCN5AQ14524 2016 aa11.07□□□□□ -0.64
USP3-219ENST00000561326 TET1Q8NFU7 2136 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 SMIM28A0A1B0GU29 152 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 EVI5O60447 810 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 TUBB4AP04350 444 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 COL6A1P12109 1028 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 KRT5P13647 590 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 CYP3A5P20815 502 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 TNFAIP3P21580 790 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 MNX1P50219 401 aaPredicted RBP11.06□□□□□ -0.64
USP3-219ENST00000561326 PTK2Q05397 1052 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms