RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 UBA7P41226 1012 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
SNX1-213ENST00000561026 MCL1Q07820 350 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 SEZ6Q53EL9 994 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 VARS2Q5ST30 1063 aaKnown RBP17.72■□□□□ 0.43
SNX1-213ENST00000561026 ST13P5Q8NFI4 369 aaPredicted RBP17.72■□□□□ 0.43
SNX1-213ENST00000561026 ZNF461Q8TAF7 563 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 ITFG1Q8TB96 612 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 GPR152Q8TDT2 470 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 KCNN1Q92952 543 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 DNMT3BQ9UBC3 853 aaKnown RBP17.72■□□□□ 0.43
SNX1-213ENST00000561026 NUB1Q9Y5A7 615 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 PROB1E7EW31 1015 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 H0YCG3 227 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 STK25O00506 426 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 TBC1D4O60343 1298 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 BMP15O95972 392 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 NCKAP1LP55160 1127 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 MRPL58Q14197 206 aaKnown RBP17.71■□□□□ 0.43
SNX1-213ENST00000561026 PARM1Q6UWI2 310 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 HAUS6Q7Z4H7 955 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 FGF14Q92915 247 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 CALML4Q96GE6 196 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 RPP25Q9BUL9 199 aaKnown RBP17.71■□□□□ 0.43
SNX1-213ENST00000561026 PLEKHA5Q9HAU0 1116 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 SLC2A4RGQ9NR83 387 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 HCFC1R1Q9NWW0 138 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 KCNH3Q9ULD8 1083 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 ODF2LQ9ULJ1 636 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 CA14Q9ULX7 337 aa17.71■□□□□ 0.43
SNX1-213ENST00000561026 GFRA3O60609 400 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 ABLIM3O94929 683 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 ROR1Q01973 937 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 PABPC1LQ4VXU2 614 aaKnown RBP17.7■□□□□ 0.42
SNX1-213ENST00000561026 BRAPQ7Z569 592 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 GPBP1Q86WP2 473 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 CCDC105Q8IYK2 499 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 SUSD3Q96L08 255 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 REEP2Q9BRK0 252 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 HAPLN2Q9GZV7 340 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 CFAP54Q96N23 3096 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 DMDP11532 3685 aa17.7■□□□□ 0.42
SNX1-213ENST00000561026 ARHGEF37A1IGU5 675 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 WDR27A2RRH5 827 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 H7C4K7 107 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 CLTAP09496 248 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 CXCL8P10145 99 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 ATF2P15336 505 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 SCP2P22307 547 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 LONP1P36776 959 aaKnown RBP17.69■□□□□ 0.42
SNX1-213ENST00000561026 NBL1P41271 181 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 MATR3P43243 847 aaKnown RBP eCLIP17.69■□□□□ 0.42
SNX1-213ENST00000561026 GPC5P78333 572 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 MTSS1LQ765P7 747 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 DTWD2Q8NBA8 298 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 LRRC15Q8TF66 581 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 BICD1Q96G01 975 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 TBC1D17Q9HA65 648 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 BLOC1S4Q9NUP1 217 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 FBXL5Q9UKA1 691 aa17.69■□□□□ 0.42
SNX1-213ENST00000561026 CITO14578 2027 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 TTC26A0AVF1 554 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 RFX1P22670 979 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 ELF1P32519 619 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 MCM4P33991 863 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 ZNF131P52739 623 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 ARPP19P56211 112 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 GRIN1Q05586 938 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 DHX8Q14562 1220 aaKnown RBP17.68■□□□□ 0.42
SNX1-213ENST00000561026 SF3A1Q15459 793 aaKnown RBP17.68■□□□□ 0.42
SNX1-213ENST00000561026 PHLDB3Q6NSJ2 640 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 NPAS3Q8IXF0 933 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 MYCT1Q8N699 235 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 ARHGEF3Q9NR81 526 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 TUBGCP4Q9UGJ1 667 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 TBX20Q9UMR3 447 aa17.68■□□□□ 0.42
SNX1-213ENST00000561026 PTPRZ1P23471 2315 aaPredicted RBP17.68■□□□□ 0.42
SNX1-213ENST00000561026 RIF1Q5UIP0 2472 aaKnown RBP17.67■□□□□ 0.42
SNX1-213ENST00000561026 PRRG1O14668 218 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 RHOP08100 348 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 PLCG1P19174 1290 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 LIG4P49917 911 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 SPAG1Q07617 926 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 MCM6Q14566 821 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 KARSQ15046 597 aaKnown RBP17.67■□□□□ 0.42
SNX1-213ENST00000561026 ZBTB6Q15916 424 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 KYAT1Q16773 422 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 CTXN3Q4LDR2 81 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 TPGS2Q68CL5 300 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 TCEAL8Q8IYN2 117 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 APPL2Q8NEU8 664 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 RAD54LQ92698 747 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 DDX12PQ92771 950 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 PARVGQ9HBI0 331 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 AVENQ9NQS1 362 aaPredicted RBP17.67■□□□□ 0.42
SNX1-213ENST00000561026 MRPS23Q9Y3D9 190 aaKnown RBP17.67■□□□□ 0.42
SNX1-213ENST00000561026 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.67■□□□□ 0.42
SNX1-213ENST00000561026 MYH11P35749 1972 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 NOTCH4Q99466 2003 aa17.67■□□□□ 0.42
SNX1-213ENST00000561026 HNRNPDLO14979 420 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms