RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 HAUS6Q7Z4H7 955 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 LUZP1Q86V48 1076 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 GAS2L3Q86XJ1 694 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 ZNF280BQ86YH2 543 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 RHPN2Q8IUC4 686 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 CREBRFQ8IUR6 639 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 CSGALNACT2Q8N6G5 542 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 ZNF507Q8TCN5 953 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 PRPF31Q8WWY3 499 aaKnown RBP12.84□□□□□ -0.35
LDLR-212ENST00000560467 BICD1Q96G01 975 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 NLRP4Q96MN2 994 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 NTPCRQ9BSD7 190 aaKnown RBP12.84□□□□□ -0.35
LDLR-212ENST00000560467 TRAIPQ9BWF2 469 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 ST6GALNAC4Q9H4F1 302 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 SFXN1Q9H9B4 322 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 FAM105AQ9NUU6 356 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 NFE2L3Q9Y4A8 694 aa12.84□□□□□ -0.35
LDLR-212ENST00000560467 PLXNA3P51805 1871 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 SPDYE4A6NLX3 237 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 PDXKO00764 312 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 CETN3O15182 167 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 SLC16A4O15374 487 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 PI15O43692 258 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 GNA14O95837 355 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 SERPINC1P01008 464 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 SRGAP2CP0DJJ0 459 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 NPR3P17342 541 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 CLCN5P51795 746 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 AFF1P51825 1210 aaKnown RBP12.83□□□□□ -0.36
LDLR-212ENST00000560467 STX17P56962 302 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 FKBP3Q00688 224 aaKnown RBP12.83□□□□□ -0.36
LDLR-212ENST00000560467 FOXR2Q6PJQ5 311 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 CCDC149Q6ZUS6 474 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 GPR149Q86SP6 731 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 ZNF410Q86VK4 478 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 NELFCDQ8IXH7 590 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 PLCD3Q8N3E9 789 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 KIAA0895Q8NCT3 520 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 HPS3Q969F9 1004 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 KLHL5Q96PQ7 755 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 POLD4Q9HCU8 107 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 GPRC5CQ9NQ84 441 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 PCDHB2Q9Y5E7 798 aa12.83□□□□□ -0.36
LDLR-212ENST00000560467 CBFA2T2O43439 604 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 CNPP09543 421 aaKnown RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 NMT1P30419 496 aaKnown RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 RAB27AP51159 221 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 CLCN4P51793 760 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 LAMTOR4Q0VGL1 99 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 BMT2Q1RMZ1 405 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 EDRF1Q3B7T1 1238 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 CENPPQ6IPU0 288 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 AGMOQ6ZNB7 445 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 OTOP3Q7RTS5 596 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 APBB1IPQ7Z5R6 666 aaPredicted RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 PPFIBP1Q86W92 1011 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 SCFD1Q8WVM8 642 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 NKD2Q969F2 451 aaPredicted RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 ACSF2Q96CM8 615 aaPredicted RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 INO80BQ9C086 356 aaPredicted RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 THAP9Q9H5L6 903 aa12.82□□□□□ -0.36
LDLR-212ENST00000560467 EP300Q09472 2414 aaPredicted RBP12.82□□□□□ -0.36
LDLR-212ENST00000560467 VPS13AQ96RL7 3174 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 NARSO43776 548 aaKnown RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 LILRB3O75022 631 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 ZNF623O75123 536 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 DDHD2O94830 711 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 PRPF6O94906 941 aaKnown RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 MYBP10242 640 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 SKIP12755 728 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 CD44P16070 742 aaKnown RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 AOC1P19801 751 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 KLRC2P26717 231 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 NCKAP1LP55160 1127 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 GTF2BQ00403 316 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 POU5F1BQ06416 359 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 MAPK7Q13164 816 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 TDGQ13569 410 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 IQCB1Q15051 598 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 MAPK6Q16659 721 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 ANKRD40Q6AI12 368 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 SLFN12LQ6IEE8 588 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 EPM2AIP1Q7L775 607 aaPredicted RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 USP37Q86T82 979 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 DHX40Q8IX18 779 aaKnown RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 CCDC105Q8IYK2 499 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 DAW1Q8N136 415 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 SIX5Q8N196 739 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 RNF149Q8NC42 400 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 URGCPQ8TCY9 931 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 RSPH1Q8WYR4 309 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 CEP63Q96MT8 703 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 SRRTQ9BXP5 876 aaKnown RBP12.81□□□□□ -0.36
LDLR-212ENST00000560467 EMILIN2Q9BXX0 1053 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 TRIM5Q9C035 493 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 TMEM134Q9H6X4 195 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 MINDY3Q9H8M7 445 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 KCNK12Q9HB15 430 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 IFT122Q9HBG6 1241 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 XPNPEP1Q9NQW7 623 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms