RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ARMCX3Q9UH62 379 aaPredicted RBP10.9□□□□□ -0.66
USP3-216ENST00000559873 ITGA11Q9UKX5 1188 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 NUB1Q9Y5A7 615 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 NLRC5Q86WI3 1866 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 SF3B1O75533 1304 aaKnown RBP eCLIP10.89□□□□□ -0.671e-6■■■■■ 175.4
USP3-216ENST00000559873 H3BNC9 293 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 SOX1O00570 391 aaPredicted RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 NRP1O14786 923 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 IKBKBO14920 756 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 MEFVO15553 781 aaPredicted RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 LPXNO60711 386 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 N4BP1O75113 896 aaKnown RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 TADA2AO75478 443 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 FGF18O76093 207 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 B3GAT3O94766 335 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 CLSTN1O94985 981 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 GALTP07902 379 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 LINC00271P0C7V0 271 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 PRKCSHP14314 528 aaPredicted RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 VAMP7P51809 220 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 PLCB3Q01970 1234 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 MYL5Q02045 173 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 SPAG1Q07617 926 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 BIRC3Q13489 604 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 GPM6BQ13491 265 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 DCAF17Q5H9S7 520 aaPredicted RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 TCERG1LQ5VWI1 586 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 FRMD5Q7Z6J6 570 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 EFCAB13Q8IY85 973 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 KLHL23Q8NBE8 558 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 ANKRD20A12PQ8NF67 263 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 IGSF21Q96ID5 467 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 LRCH3Q96II8 777 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 DUSP9Q99956 384 aaKnown RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 MTMR12Q9C0I1 747 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 DNAJC25Q9H1X3 360 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 INTS13Q9NVM9 706 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 DPP3Q9NY33 737 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 MAGEC2Q9UBF1 373 aaPredicted RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 HCSTQ9UBK5 93 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 ADAM28Q9UKQ2 775 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 LZTS1Q9Y250 596 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 SSX2IPQ9Y2D8 614 aa10.89□□□□□ -0.67
USP3-216ENST00000559873 PDCD11Q14690 1871 aaKnown RBP10.89□□□□□ -0.67
USP3-216ENST00000559873 LRRIQ3A6PVS8 624 aaPredicted RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 PHACTR2O75167 634 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 ARHGEF15O94989 841 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 URODP06132 367 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 TPM2P07951 284 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 KRT19P08727 400 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 GTF2H1P32780 548 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 PBX3P40426 434 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 TAF6P49848 677 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 CLCNKBP51801 687 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 TPM4P67936 248 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 RBP5P82980 135 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 CREMQ03060 361 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 SOX4Q06945 474 aaPredicted RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 CETN1Q12798 172 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 MYO1EQ12965 1108 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 TRPC3Q13507 836 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 ZBTB6Q15916 424 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 UPP1Q16831 310 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 SV2CQ496J9 727 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 ANO6Q4KMQ2 910 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 FUT10Q6P4F1 479 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 LRRC52Q8N7C0 313 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 CCDC150Q8NCX0 1101 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 ENOX1Q8TC92 643 aaKnown RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 PARD3BQ8TEW8 1205 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 PPP2R3CQ969Q6 453 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 C18orf25Q96B23 403 aaPredicted RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 CNOT6LQ96LI5 555 aaKnown RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 GAS2L1Q99501 681 aaPredicted RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 BPIFA3Q9BQP9 254 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 SRRTQ9BXP5 876 aaKnown RBP10.88□□□□□ -0.67
USP3-216ENST00000559873 IMPG2Q9BZV3 1241 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 THAP9Q9H5L6 903 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 CERS4Q9HA82 394 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 GOLGA2P5Q9HBQ8 144 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 MARCH5Q9NX47 278 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 KIAA1671Q9BY89 1806 aa10.88□□□□□ -0.67
USP3-216ENST00000559873 SMTNL1A8MU46 457 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 BECN2A8MW95 431 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 NT5C1B-RDH14C9J2C7 533 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 B4GALT3O60512 393 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 KIF4AO95239 1232 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 SOD2P04179 222 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 ITGB3P05106 788 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 ITGB1P05556 798 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 EEF1GP26641 437 aaKnown RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 POLR2BP30876 1174 aaKnown RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 MXI1P50539 228 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 FXR1P51114 621 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP3-216ENST00000559873 MARSP56192 900 aaKnown RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 CLDN10P78369 228 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 TIGD5Q53EQ6 642 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 C9orf57Q5W0N0 161 aa10.87□□□□□ -0.67
USP3-216ENST00000559873 LMBRD2Q68DH5 695 aaPredicted RBP10.87□□□□□ -0.67
USP3-216ENST00000559873 PDE12Q6L8Q7 609 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms