RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 MRPL4Q9BYD3 311 aaKnown RBP12.76□□□□□ -0.37
USP3-214ENST00000559718 KMT5AQ9NQR1 393 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 DNMT3BQ9UBC3 853 aaKnown RBP12.76□□□□□ -0.37
USP3-214ENST00000559718 LAD1O00515 517 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 XYLBO75191 536 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 DCNP07585 359 aaKnown RBP12.75□□□□□ -0.37
USP3-214ENST00000559718 RFX1P22670 979 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 PROZP22891 400 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 PRPHP41219 470 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 YARSP54577 528 aaKnown RBP12.75□□□□□ -0.37
USP3-214ENST00000559718 GPC5P78333 572 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 COL4A3Q01955 1670 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 SEZ6Q53EL9 994 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 RIF1Q5UIP0 2472 aaKnown RBP12.75□□□□□ -0.37
USP3-214ENST00000559718 PDXDC1Q6P996 788 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 APBB1IPQ7Z5R6 666 aaPredicted RBP12.75□□□□□ -0.37
USP3-214ENST00000559718 ING5Q8WYH8 240 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 C18orf25Q96B23 403 aaPredicted RBP12.75□□□□□ -0.37
USP3-214ENST00000559718 DRC1Q96MC2 740 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 CFAP54Q96N23 3096 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 UROC1Q96N76 676 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 PNMA5Q96PV4 448 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 TCHPQ9BT92 498 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 ARHGEF3Q9NR81 526 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 SLC2A4RGQ9NR83 387 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 BACE2Q9Y5Z0 518 aa12.75□□□□□ -0.37
USP3-214ENST00000559718 FAM186AA6NE01 2351 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 MYH15Q9Y2K3 1946 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 NPHP3-ACAD11A0A0J9YXS1 232 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 PODXLO00592 558 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 CD2BP2O95400 341 aaKnown RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 MCF2P10911 925 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 ATP2C1P98194 919 aaPredicted RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 UVSSAQ2YD98 709 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 SPECC1Q5M775 1068 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 VARS2Q5ST30 1063 aaKnown RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 MPZL3Q6UWV2 235 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 ANKS3Q6ZW76 656 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 NPAS3Q8IXF0 933 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 NKD2Q969F2 451 aaPredicted RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 ACAP3Q96P50 834 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 FOXQ1Q9C009 403 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 TOPORSQ9NS56 1045 aaPredicted RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 RBM19Q9Y4C8 960 aaKnown RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 ZFP37Q9Y6Q3 630 aaPredicted RBP12.74□□□□□ -0.37
USP3-214ENST00000559718 VPS13AQ96RL7 3174 aa12.74□□□□□ -0.37
USP3-214ENST00000559718 CITO14578 2027 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 VWA3AA6NCI4 1184 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 TRAPPC3O43617 180 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 LRRN2O75325 713 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 GLULP15104 373 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 KCNE1P15382 129 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 GUCY2CP25092 1073 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 ARPP19P56211 112 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 ROR1Q01973 937 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 RABEP1Q15276 862 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 SLC5A9Q2M3M2 681 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 SLC10A6Q3KNW5 377 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 PABPC1LQ4VXU2 614 aaKnown RBP12.73□□□□□ -0.37
USP3-214ENST00000559718 RILPL1Q5EBL4 403 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 HYIQ5T013 277 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 PHLDB3Q6NSJ2 640 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 TMEM161BQ8NDZ6 487 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 TMX3Q96JJ7 454 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 KXD1Q9BQD3 176 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 NTPCRQ9BSD7 190 aaKnown RBP12.73□□□□□ -0.37
USP3-214ENST00000559718 C17orf75Q9HAS0 396 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 SLC38A7Q9NVC3 462 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 DLGAP2Q9P1A6 1054 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 CNTN3Q9P232 1028 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 ANKFY1Q9P2R3 1169 aa12.73□□□□□ -0.37
USP3-214ENST00000559718 WDR27A2RRH5 827 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 NRG2O14511 850 aaPredicted RBP12.72□□□□□ -0.37
USP3-214ENST00000559718 TBC1D4O60343 1298 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SEC24AO95486 1093 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 RHOP08100 348 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 POU2F2P09086 479 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 MAPTP10636 758 aaKnown RBP12.72□□□□□ -0.37
USP3-214ENST00000559718 PLS3P13797 630 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 GJB2P29033 226 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SLC12A3P55017 1021 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SPAG1Q07617 926 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SNW1Q13573 536 aaKnown RBP12.72□□□□□ -0.37
USP3-214ENST00000559718 NOLC1Q14978 699 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP3-214ENST00000559718 SLC8B1Q6J4K2 584 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 MTSS1LQ765P7 747 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SYT2Q8N9I0 419 aaPredicted RBP12.72□□□□□ -0.37
USP3-214ENST00000559718 ZNF461Q8TAF7 563 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 LRRC15Q8TF66 581 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SPIRE2Q8WWL2 714 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 MCRS1Q96EZ8 462 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 HAPLN2Q9GZV7 340 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 TUBGCP4Q9UGJ1 667 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 FBXL5Q9UKA1 691 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 SIT1Q9Y3P8 196 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 MYH11P35749 1972 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 CACNA1IQ9P0X4 2223 aa12.72□□□□□ -0.37
USP3-214ENST00000559718 ARHGEF37A1IGU5 675 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 PRRG1O14668 218 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms