RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 INTS13Q9NVM9 706 aa15.19■□□□□ 0.02
VIPAS39-208ENST00000556412 DPP3Q9NY33 737 aa15.19■□□□□ 0.02
VIPAS39-208ENST00000556412 R3HCC1Q9Y3T6 440 aaKnown RBP15.19■□□□□ 0.02
VIPAS39-208ENST00000556412 SMTNL1A8MU46 457 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 PHACTR2O75167 634 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 ALDH2P05091 517 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 GCLMP48507 274 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 ZNF445P59923 1031 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 ZBTB6Q15916 424 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 KCNT2Q6UVM3 1135 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 NT5DC4Q86YG4 428 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 DHX40Q8IX18 779 aaKnown RBP15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 COLGALT1Q8NBJ5 622 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 BORCS6Q96GS4 357 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 TSPAN18Q96SJ8 248 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 FAN1Q9Y2M0 1017 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 PCDHB12Q9Y5F1 795 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 PDE4DIPQ5VU43 2346 aa15.18■□□□□ 0.02
VIPAS39-208ENST00000556412 KCNJ18B7U540 433 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 F8W810 466 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 PODXLO00592 558 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 NRP1O14786 923 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 CAVIN2O95810 425 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 ITGB3P05106 788 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 GALTP07902 379 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 TAP1Q03518 808 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 KCNJ12Q14500 433 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 NCAPHQ15003 741 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 IRF2BP1Q8IU81 584 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 C1orf127Q8N9H9 656 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 RNF214Q8ND24 703 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 FAM200AQ8TCP9 573 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 ZNF516Q92618 1163 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 TMEM175Q9BSA9 504 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 PES1O00541 588 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 IKBKBO14920 756 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 B3GAT3O94766 335 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 CYP3A5P20815 502 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 CDK11BP21127 795 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 POLR2BP30876 1174 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 PPP3CAQ08209 521 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 C1orf220Q5T0J3 134 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 TRAPPC11Q7Z392 1133 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 ARNTL2Q8WYA1 636 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 CLP1Q92989 425 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 DDX27Q96GQ7 796 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 UROC1Q96N76 676 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 TGS1Q96RS0 853 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 AGAP1Q9UPQ3 857 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 NUB1Q9Y5A7 615 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 TTC3P53804 2025 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 COL4A6Q14031 1691 aa15.17■□□□□ 0.02
VIPAS39-208ENST00000556412 GOLGA6L19H0YKK7 550 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 PPEF2O14830 753 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 STX10O60499 249 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 TADA2AO75478 443 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 CSPG5O95196 566 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 KIF4AO95239 1232 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 PRKCSHP14314 528 aaPredicted RBP15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 BMPR1AP36894 532 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 AP3M2P53677 418 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 TPM4P67936 248 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 TRPC3Q13507 836 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 IQCB1Q15051 598 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 UPP1Q16831 310 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 TMEM173Q86WV6 379 aaPredicted RBP15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 TRIM59Q8IWR1 403 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 SLC35C1Q96A29 364 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 ANP32EQ9BTT0 268 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 COLEC11Q9BWP8 271 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 ITGA11Q9UKX5 1188 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 RWDD3Q9Y3V2 267 aa15.16■□□□□ 0.02
VIPAS39-208ENST00000556412 SOX1O00570 391 aaPredicted RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 LINC00271P0C7V0 271 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 IGFBP6P24592 240 aaPredicted RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 RPL9P32969 192 aaKnown RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 MARSP56192 900 aaKnown RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 CLDN10P78369 228 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 EPC2Q52LR7 807 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 TCP11X2Q5H9J9 407 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 CDKAL1Q5VV42 579 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 TDRD10Q5VZ19 366 aaKnown RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 C9orf57Q5W0N0 161 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 SCARA3Q6AZY7 606 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 SV2AQ7L0J3 742 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 ANKRD20A12PQ8NF67 263 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 TMEM169Q96HH4 297 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 TAB2Q9NYJ8 693 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 SPG21Q9NZD8 308 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 ITGB1P05556 798 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 EEF1GP26641 437 aaKnown RBP15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 LRPAP1P30533 357 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 PPM1AP35813 382 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 PIK3CAP42336 1068 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 MXI1P50539 228 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 RBP5P82980 135 aa15.15■□□□□ 0.02
VIPAS39-208ENST00000556412 DCLRE1AQ6PJP8 1040 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms