RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 RTN3O95197 1032 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ROR2Q01974 943 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 SPARCL1Q14515 664 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 KIF22Q14807 665 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PARP10Q53GL7 1025 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ARHGAP22Q7Z5H3 698 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ANKS1BQ7Z6G8 1248 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 POU5F2Q8N7G0 328 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 MAIP1Q8WWC4 291 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PTPRN2Q92932 1015 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 MECRQ9BV79 373 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 MAK16Q9BXY0 300 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 KIAA1586Q9HCI6 787 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 DDX18Q9NVP1 670 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 MTMR4Q9NYA4 1195 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 CLIC5Q9NZA1 410 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PRKAG3Q9UGI9 489 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PARP2Q9UGN5 583 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PNMA6FA0A0J9YX94 578 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 CES2O00748 559 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 HNRNPRO43390 633 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 GAS8O95995 478 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ESRRAP11474 423 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 HARSP12081 509 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PDIA2Q13087 525 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ZBTB46Q86UZ6 589 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 CCDC33Q8N5R6 958 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PPFIBP2Q8ND30 876 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 ERMNQ8TAM6 284 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PYDC1Q8WXC3 89 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 LZTS2Q9BRK4 669 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 THTPAQ9BU02 230 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 AGPAT3Q9NRZ7 376 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 GINM1Q9NU53 330 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 WDR35Q9P2L0 1181 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PPARGC1AQ9UBK2 798 aaKnown RBP9.43□□□□□ -0.9
SYNE2-217ENST00000555022 PCDHA3Q9Y5H8 950 aa9.43□□□□□ -0.9
SYNE2-217ENST00000555022 STRCQ7RTU9 1775 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 FAM237BA0A1B0GVD1 139 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PDXKO00764 312 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 TP73O15350 636 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 MAP3K7O43318 606 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 CYP1A1P04798 512 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 CFHP08603 1231 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 BGNP21810 368 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 ALDH18A1P54886 795 aaKnown RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 ICA1Q05084 483 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 TRAF1Q13077 416 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 TBC1D25Q3MII6 688 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 BBS9Q3SYG4 887 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PPP6R3Q5H9R7 873 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 ZFPM1Q8IX07 1006 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 AGGF1Q8N302 714 aaeCLIP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF333Q96JL9 665 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 CCDC77Q9BR77 488 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 LRMDAQ9H2I8 198 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 DDX4Q9NQI0 724 aaKnown RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 CHMP2BQ9UQN3 213 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 BCORQ6W2J9 1755 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 NCANO14594 1321 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 MSH4O15457 936 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PDE5AO76074 875 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 SKIP12755 728 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PGM1P36871 562 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 VHLP40337 213 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 GCLCP48506 637 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 RTP1P59025 263 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 DOK7Q18PE1 504 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 POMGNT1Q8WZA1 660 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 SERPINB12Q96P63 405 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 SETDB2Q96T68 719 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 METTL14Q9HCE5 456 aaKnown RBP9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PREBQ9HCU5 417 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 STOML1Q9UBI4 398 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 UTRNP46939 3433 aa9.42□□□□□ -0.9
SYNE2-217ENST00000555022 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 B2RBV5 119 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CDH16O75309 829 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZMPSTE24O75844 475 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ATP6V1B1P15313 513 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CTNNA2P26232 953 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ATP5DP30049 168 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF543Q08ER8 600 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 NR1H3Q13133 447 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SIX1Q15475 284 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 FYB2Q5VWT5 728 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 LPCAT4Q643R3 524 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 C4orf50Q6ZRC1 276 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ANKRD35Q8N283 1001 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RBBP8NLQ8NC74 664 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ACSS2Q9NR19 701 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 LRRC4BQ9NT99 713 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 WRAP73Q9P2S5 460 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CNOT7Q9UIV1 285 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SCAF8Q9UPN6 1271 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 BTNL10A8MVZ5 291 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 BHMG1C9JSJ3 638 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms