RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CENPPQ6IPU0 288 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 ZNF662Q6ZS27 426 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 OTOP3Q7RTS5 596 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 CCDC65Q8IXS2 484 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 CCDC170Q8IYT3 715 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 MAML2Q8IZL2 1156 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-216ENST00000554975 CEP112Q8N8E3 955 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 ZNF668Q96K58 619 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-216ENST00000554975 ERGIC2Q96RQ1 377 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 DNAJC7Q99615 494 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 TUBGCP2Q9BSJ2 902 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 MMTAG2Q9BU76 263 aaKnown RBP12.1□□□□□ -0.47
SHMT2-216ENST00000554975 RNF216Q9NWF9 866 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-216ENST00000554975 CAPN11Q9UMQ6 739 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 RALGAPA1Q6GYQ0 2036 aa12.1□□□□□ -0.47
SHMT2-216ENST00000554975 FAM208BQ5VWN6 2430 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 IGKV6D-21A0A0A0MT36 114 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 SLC37A4O43826 429 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ATG7O95352 703 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 C22orf31O95567 290 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CCNE2O96020 404 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CTSAP10619 480 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 TRIM21P19474 475 aaKnown RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CDC25AP30304 524 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ATXN1P54253 815 aaKnown RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ZBED6P86452 979 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CDK17Q00537 523 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 PPP2R3AQ06190 1150 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ELF2Q15723 593 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ST3GAL2Q16842 350 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ODR4Q5SWX8 454 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 FAM160B1Q5W0V3 765 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 MIS18BP1Q6P0N0 1132 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 TOGARAM2Q6ZUX3 1019 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ZNF598Q86UK7 904 aaKnown RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CREBRFQ8IUR6 639 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CCDC60Q8IWA6 550 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ABI1Q8IZP0 508 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 ST13P5Q8NFI4 369 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CRYGNQ8WXF5 182 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 GOLGA1Q92805 767 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 EDEM3Q9BZQ6 932 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 TSGA10Q9BZW7 698 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 NUCKS1Q9H1E3 243 aaKnown RBP12.09□□□□□ -0.47
SHMT2-216ENST00000554975 HAUS4Q9H6D7 363 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 SFXN1Q9H9B4 322 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 TBC1D22BQ9NU19 505 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 BLOC1S4Q9NUP1 217 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 WNT16Q9UBV4 365 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 PCDHA12Q9UN75 941 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 SAMM50Q9Y512 469 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 MRFAP1Q9Y605 127 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 IRAK3Q9Y616 596 aa12.09□□□□□ -0.47
SHMT2-216ENST00000554975 CTAGE9A4FU28 777 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 TRIM49BA6NDI0 452 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 SOWAHDA6NJG2 315 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 HOXA2O43364 376 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 HBP1O60381 514 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 B4GALT3O60512 393 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 TADA3O75528 432 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 FGFR4P22455 802 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 CIITAP33076 1130 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 CLCN3P51790 818 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 TBC1D8BQ0IIM8 1120 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 MEA1Q16626 185 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 FAM26FQ5R3K3 315 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 TRMT1LQ7Z2T5 733 aaKnown RBP12.08□□□□□ -0.48
SHMT2-216ENST00000554975 C1orf210Q8IVY1 113 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 SLC44A3Q8N4M1 653 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 GPR152Q8TDT2 470 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 TMEM169Q96HH4 297 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 FAM20AQ96MK3 541 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 CEP63Q96MT8 703 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 PNMA5Q96PV4 448 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 MYADMQ96S97 322 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 FOXQ1Q9C009 403 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 KCNMB3Q9NPA1 279 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 LUC7LQ9NQ29 371 aaKnown RBP12.08□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF302Q9NR11 478 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 OGFRQ9NZT2 677 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 IGSF9Q9P2J2 1179 aa12.08□□□□□ -0.48
SHMT2-216ENST00000554975 COL1A2P08123 1366 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 DCDC2BA2VCK2 349 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 MSH4O15457 936 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 DHX15O43143 795 aaKnown RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ATP8B1O43520 1251 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 CHMP2AO43633 222 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 KRT86O43790 486 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 GAS7O60861 476 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ZC3H11AO75152 810 aaKnown RBP eCLIP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 MUTP22033 750 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 CLCN4P51793 760 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 GOLGA8FQ08AF8 430 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 GOLGA8DPQ0D2H9 430 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 WHAMMP3Q1A5X7 153 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 Q4G0T1 1027 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF746Q6NUN9 644 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 SWSAP1Q6NVH7 229 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ZC3H14Q6PJT7 736 aaKnown RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ABHD15Q6UXT9 468 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms