RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 DPCR1Q3MIW9 517 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 NT5DC1Q5TFE4 455 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 NCAPH2Q6IBW4 605 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 GSTCDQ8NEC7 633 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 KIF18AQ8NI77 898 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 TCP11Q8WWU5 503 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 CCDC51Q96ER9 411 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 DYDC2Q96IM9 177 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 C16orf45Q96MC5 204 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 PAAF1Q9BRP4 392 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 SPATA6Q9NWH7 488 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 FNIP2Q9P278 1114 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 FBXW11Q9UKB1 542 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 KCNJ14Q9UNX9 436 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 MTF2Q9Y483 593 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 PPME1Q9Y570 386 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 MIA3Q5JRA6 1907 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 NPTXRO95502 500 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 AXLP30530 894 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 FOSBP53539 338 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 STARD6P59095 220 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 PTENP60484 403 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 GRIK3Q13003 919 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 UBXN2BQ14CS0 331 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 RSPO4Q2I0M5 234 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-204ENST00000554660 KRT25Q7Z3Z0 450 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 NOSTRINQ8IVI9 506 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 C4orf19Q8IY42 314 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 KRI1Q8N9T8 703 aaKnown RBP12.53□□□□□ -0.4
VPS33B-204ENST00000554660 ASAP3Q8TDY4 903 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 HAS1Q92839 578 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 KXD1Q9BQD3 176 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 NCDNQ9UBB6 729 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 CDH7Q9ULB5 785 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 POLIQ9UNA4 740 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 GIT1Q9Y2X7 761 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 CEP250Q9BV73 2442 aa12.53□□□□□ -0.4
VPS33B-204ENST00000554660 SF3B1O75533 1304 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS33B-204ENST00000554660 MTCL1Q9Y4B5 1905 aaKnown RBP12.52□□□□□ -0.4
VPS33B-204ENST00000554660 KANSL1LA0AUZ9 987 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 GOLGA6L9A6NEM1 432 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CASTOR2A6NHX0 329 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CCL16O15467 120 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 ASAP2O43150 1006 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 LAMTOR5O43504 91 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 KIF4AO95239 1232 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 C8AP07357 584 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CD72P21854 359 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 FAM193AP78312 1265 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CREMQ03060 361 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 SPIRE1Q08AE8 756 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 NCBP1Q09161 790 aaKnown RBP12.52□□□□□ -0.41
VPS33B-204ENST00000554660 GNL2Q13823 731 aaKnown RBP12.52□□□□□ -0.41
VPS33B-204ENST00000554660 EPHA7Q15375 998 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 MLF2Q15773 248 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-204ENST00000554660 LIN9Q5TKA1 542 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 SHC4Q6S5L8 630 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 KRBA2Q6ZNG9 492 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 NEK8Q86SG6 692 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CEP57Q86XR8 500 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 EXOC8Q8IYI6 725 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 HACE1Q8IYU2 909 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 MLKLQ8NB16 471 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 ITFG1Q8TB96 612 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 FGF13Q92913 245 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 SHDQ96IW2 340 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 FAM20AQ96MK3 541 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CNTNAP3BQ96NU0 1288 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 BCO2Q9BYV7 579 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 CNTNAP3Q9BZ76 1288 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 L2HGDHQ9H9P8 463 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 PARP2Q9UGN5 583 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 GPR179Q6PRD1 2367 aa12.52□□□□□ -0.41
VPS33B-204ENST00000554660 ZFHX4Q86UP3 3567 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 CCDC194A0A1B0GVG4 234 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 ADAM12O43184 909 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 CCNT1O60563 726 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 TADA2AO75478 443 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 C1RP00736 705 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 XBP1P17861 261 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 FANCCQ00597 558 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 CSTF1Q05048 431 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 TFDP1Q14186 410 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 MXD4Q14582 209 aaPredicted RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PCBP1Q15365 356 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PSMD5Q16401 504 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PPM1LQ5SGD2 360 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PPP4R3AQ6IN85 833 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 SLC27A1Q6PCB7 646 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PIK3AP1Q6ZUJ8 805 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 MTSS1LQ765P7 747 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 OTUD6AQ7L8S5 288 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 TPH2Q8IWU9 490 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 SLC7A14Q8TBB6 771 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 CLSTN3Q9BQT9 956 aa12.51□□□□□ -0.41
VPS33B-204ENST00000554660 PYM1Q9BRP8 204 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 DDX23Q9BUQ8 820 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 SRRTQ9BXP5 876 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 XPO4Q9C0E2 1151 aaKnown RBP12.51□□□□□ -0.41
VPS33B-204ENST00000554660 ZSWIM4Q9H7M6 989 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms