RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PRDM5Q9NQX1 630 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-211ENST00000552338 RAB20Q9NX57 234 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 PARP2Q9UGN5 583 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 PCDHB7Q9Y5E2 793 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 A0A1W2PQJ5 194 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM189-UBE2V1I3L0A0 370 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 ADCY5O95622 1261 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 ASS1P00966 412 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 CST3P01034 146 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TNNC2P02585 160 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 NFICP08651 508 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TRIM49P0CI25 452 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TRIM49CP0CI26 452 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 DLATP10515 647 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 RFX1P22670 979 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 PON1P27169 355 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 RPL9P32969 192 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 GCLMP48507 274 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 AARSP49588 968 aaKnown RBP eCLIP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 WDR5P61964 334 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 HTRA4P83105 476 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 UBXN1Q04323 297 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TBX2Q13207 712 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM132DQ14C87 1099 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 EXOC3L4Q17RC7 722 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 DCAF17Q5H9S7 520 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 TCERG1LQ5VWI1 586 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 GBP6Q6ZN66 633 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 ZNF365Q70YC5 407 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 LIMS2Q7Z4I7 341 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 BEST2Q8NFU1 509 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 SP7Q8TDD2 431 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 KIF12Q96FN5 646 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 DDX27Q96GQ7 796 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 UROC1Q96N76 676 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 CASD1Q96PB1 797 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 GAD1Q99259 594 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 NAA15Q9BXJ9 866 aaKnown RBP10.34□□□□□ -0.75
LIMA1-211ENST00000552338 XYLT2Q9H1B5 865 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 CXCL16Q9H2A7 254 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 SIX2Q9NPC8 291 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 IMPACTQ9P2X3 320 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 SIX4Q9UIU6 781 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 MYO6Q9UM54 1294 aa10.34□□□□□ -0.75
LIMA1-211ENST00000552338 NOL4O94818 638 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 AMHP03971 560 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 TMEM191BP0C7N4 346 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 BMP8BP34820 402 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 MLH1P40692 756 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 PNPLA4P41247 253 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 EPHB4P54760 987 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 RBP5P82980 135 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 MYL7Q01449 175 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 GCNT1Q02742 428 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 TUSC3Q13454 348 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 TRIM14Q14142 442 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 SGSM1Q2NKQ1 1148 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 NOMO2Q5JPE7 1267 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 SPECC1LQ69YQ0 1117 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 TRIM65Q6PJ69 517 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 GLB1LQ6UWU2 654 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 DPH6Q7L8W6 267 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 COLGALT2Q8IYK4 626 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 TAS1R2Q8TE23 839 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 DPF3Q92784 378 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 SEMA4DQ92854 862 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 LPPQ93052 612 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 RPS6KC1Q96S38 1066 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 GDF15Q99988 308 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMA1-211ENST00000552338 MRPL9Q9BYD2 267 aaKnown RBP10.33□□□□□ -0.76
LIMA1-211ENST00000552338 MTMR12Q9C0I1 747 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 GANQ9H2C0 597 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 GDAP2Q9NXN4 497 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 DPP3Q9NY33 737 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 PLAGL2Q9UPG8 496 aa10.33□□□□□ -0.76
LIMA1-211ENST00000552338 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMA1-211ENST00000552338 EFEMP2O95967 443 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 HLA-DRAP01903 254 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 SLC9A1P19634 815 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 AFF1P51825 1210 aaKnown RBP10.32□□□□□ -0.76
LIMA1-211ENST00000552338 TFAMQ00059 246 aaKnown RBP10.32□□□□□ -0.76
LIMA1-211ENST00000552338 SOX4Q06945 474 aaPredicted RBP10.32□□□□□ -0.76
LIMA1-211ENST00000552338 NCOA4Q13772 614 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 SYCP1Q15431 976 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 UPP1Q16831 310 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 KLHDC7AQ5VTJ3 777 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 C9orf57Q5W0N0 161 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 ENOSF1Q7L5Y1 443 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 CREBRFQ8IUR6 639 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 CMTR2Q8IYT2 770 aaKnown RBP10.32□□□□□ -0.76
LIMA1-211ENST00000552338 SPATA18Q8TC71 538 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 HELQQ8TDG4 1101 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 ZFP42Q96MM3 310 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 PPP1R9BQ96SB3 815 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 SLC9A7Q96T83 725 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 TMEM175Q9BSA9 504 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 KLK14Q9P0G3 267 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 CAPN11Q9UMQ6 739 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms