RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TTC13Q8NBP0 860 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 C1orf131Q8NDD1 294 aaKnown RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 PRPF31Q8WWY3 499 aaKnown RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 TATDN2Q93075 761 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 WDR18Q9BV38 432 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 FGFBP2Q9BYJ0 223 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 ISCUQ9H1K1 167 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 CARD9Q9H257 536 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 ACP6Q9NPH0 428 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 TRIM66O15016 1216 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 CELF2O95319 508 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 NPY5RQ15761 445 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 MAML1Q92585 1016 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 KLC2Q9H0B6 622 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 ALG13Q9NP73 1137 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 PIN4Q9Y237 131 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 PDE2AO00408 941 aaPredicted RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 P4HA2O15460 535 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 RALAP11233 206 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 LCP1P13796 627 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 PDGFRAP16234 1089 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 CALRP27797 417 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 IRAK1P51617 712 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 SENP7Q9BQF6 1050 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 MTMR12Q9C0I1 747 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 GTF3C4Q9UKN8 822 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 PHF20L1A8MW92 1017 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 RARBP10826 455 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 GUCY2CP25092 1073 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 MDH1P40925 334 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 SGSM1Q2NKQ1 1148 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 UBA3Q8TBC4 463 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 KAT5Q92993 513 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 CALR3Q96L12 384 aaKnown RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 RBM15Q96T37 977 aaKnown RBP eCLIP17.23■□□□□ 0.351e-11■■■■□ 21.9
CUX1-213ENST00000549414 GCOM2Q9BZD3 368 aaPredicted RBP17.23■□□□□ 0.35
CUX1-213ENST00000549414 DCTN4Q9UJW0 460 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 POLIQ9UNA4 740 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 KIF13AQ9H1H9 1805 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 LMO7Q8WWI1 1683 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 RRM1P23921 792 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 HSD17B3P37058 310 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 NME3Q13232 169 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 SPARCL1Q14515 664 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 SLC29A2Q14542 456 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 MCUQ8NE86 351 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 OR6J1Q8NGC5 347 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 SLC5A5Q92911 643 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 ZBED2Q9BTP6 218 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 ZNF446Q9NWS9 450 aa17.23■□□□□ 0.35
CUX1-213ENST00000549414 CHST13Q8NET6 341 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 DEPDC1BQ8WUY9 529 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 RAB3IPQ96QF0 476 aaPredicted RBP17.22■□□□□ 0.35
CUX1-213ENST00000549414 AIPL1Q9NZN9 384 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 DDX3XO00571 662 aaKnown RBP eCLIP17.22■□□□□ 0.35
CUX1-213ENST00000549414 CNTN2Q02246 1040 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 XRRA1Q6P2D8 792 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 C4orf50Q6ZRC1 276 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 ARHGEF19Q8IW93 802 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 IL31RAQ8NI17 732 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 KLHL8Q9P2G9 620 aaPredicted RBP17.22■□□□□ 0.35
CUX1-213ENST00000549414 VWA5AO00534 786 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 C6orf222P0C671 652 aaPredicted RBP17.22■□□□□ 0.35
CUX1-213ENST00000549414 SLC1A1P43005 524 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 EIF3EP60228 445 aaKnown RBP17.22■□□□□ 0.35
CUX1-213ENST00000549414 KCNMA1Q12791 1236 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 SEPT6Q14141 434 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 TSNAXIP1Q2TAA8 658 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 MEI1Q5TIA1 1274 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 FBXO16Q8IX29 292 aaPredicted RBP17.22■□□□□ 0.35
CUX1-213ENST00000549414 ZSWIM1Q9BR11 485 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 FIS1Q9Y3D6 152 aa17.22■□□□□ 0.35
CUX1-213ENST00000549414 SUPT20HL2P0C7V6 817 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 GARSP41250 739 aaKnown RBP17.21■□□□□ 0.35
CUX1-213ENST00000549414 CDR2Q01850 454 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CAV1Q03135 178 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 SLC13A5Q86YT5 568 aaPredicted RBP17.21■□□□□ 0.35
CUX1-213ENST00000549414 C4orf19Q8IY42 314 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 MDM1Q8TC05 714 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CYFIP2Q96F07 1278 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CHMP6Q96FZ7 201 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CCT8L2Q96SF2 557 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 KIAA1683Q9H0B3 1180 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 RGPD2P0DJD1 1756 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CCL15-CCL14A0A0B4J2E2 113 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 KIAA0391O15091 583 aaKnown RBP17.21■□□□□ 0.35
CUX1-213ENST00000549414 PLSCR1O15162 318 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 AP3M2P53677 418 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CCL15Q16663 113 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 TMEM139Q8IV31 216 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 SCN4BQ8IWT1 228 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 NIF3L1Q9GZT8 377 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CTSHP09668 335 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 CUL2Q13617 745 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 TMEM132DQ14C87 1099 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 HSD3B7Q9H2F3 369 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 INTUQ9ULD6 942 aa17.21■□□□□ 0.35
CUX1-213ENST00000549414 IQANK1A0A1B0GTG1 560 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 EIF3HO15372 352 aaKnown RBP eCLIP17.21■□□□□ 0.341e-7■■■□□ 16.5
CUX1-213ENST00000549414 MAP3K6O95382 1288 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms