RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 OR1G1P47890 313 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 STX17P56962 302 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 TFAMQ00059 246 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 PLCB3Q01970 1234 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 MYL5Q02045 173 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 ELAVL2Q12926 359 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 BMS1Q14692 1282 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 UPP1Q16831 310 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 EPC2Q52LR7 807 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 GLRA4Q5JXX5 417 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 BORCS6Q96GS4 357 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 TMEM169Q96HH4 297 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 FUCA2Q9BTY2 467 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 SRRTQ9BXP5 876 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 ZNF576Q9H609 170 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 DPP3Q9NY33 737 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 PUF60Q9UHX1 559 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 PDCD11Q14690 1871 aaKnown RBP12.71□□□□□ -0.37
SNHG1-221ENST00000544983 GBF1Q92538 1859 aa12.71□□□□□ -0.37
SNHG1-221ENST00000544983 CHD9Q3L8U1 2897 aa12.71□□□□□ -0.38
SNHG1-221ENST00000544983 MYO9BQ13459 2157 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 COL6A3P12111 3177 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 ANO9A1A5B4 782 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 RBAK-RBAKDNI3L0D1 243 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 NRP1O14786 923 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 B3GAT3O94766 335 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 NFICP08651 508 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 SLC11A1P49279 550 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 CCDC40Q4G0X9 1142 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 ANO6Q4KMQ2 910 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 ZNF697Q5TEC3 545 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 PDE12Q6L8Q7 609 aaKnown RBP12.7□□□□□ -0.38
SNHG1-221ENST00000544983 EFCAB13Q8IY85 973 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 GPR65Q8IYL9 337 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 SLC39A11Q8N1S5 342 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 LRRC52Q8N7C0 313 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 FBXO22Q8NEZ5 403 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 C18orf25Q96B23 403 aaPredicted RBP12.7□□□□□ -0.38
SNHG1-221ENST00000544983 CCDC127Q96BQ5 260 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 IGSF21Q96ID5 467 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 LMAN2LQ9H0V9 348 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 DNAJC25Q9H1X3 360 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 MAGEC2Q9UBF1 373 aaPredicted RBP12.7□□□□□ -0.38
SNHG1-221ENST00000544983 DNAJB4Q9UDY4 337 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 ADAM28Q9UKQ2 775 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 ANK1P16157 1881 aa12.7□□□□□ -0.38
SNHG1-221ENST00000544983 SF3B1O75533 1304 aaKnown RBP eCLIP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 CASTOR2A6NHX0 329 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 LRRIQ3A6PVS8 624 aaPredicted RBP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 H3BNC9 293 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 PODXLO00592 558 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 PMM2O15305 246 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 N4BP1O75113 896 aaKnown RBP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 TADA2AO75478 443 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 FGF18O76093 207 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 ZNF165P49910 485 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 RBP5P82980 135 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 SOX4Q06945 474 aaPredicted RBP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 SPAG1Q07617 926 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 C9orf57Q5W0N0 161 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 C11orf57Q6ZUT1 292 aaPredicted RBP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 TRAPPC11Q7Z392 1133 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 DDX53Q86TM3 631 aaKnown RBP12.69□□□□□ -0.38
SNHG1-221ENST00000544983 ANKRD20A12PQ8NF67 263 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 EEF2KMTQ96G04 330 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 ZNF560Q96MR9 790 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 MED15Q96RN5 788 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 C17orf80Q9BSJ5 609 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 CXCL16Q9H2A7 254 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 NFE2L3Q9Y4A8 694 aa12.69□□□□□ -0.38
SNHG1-221ENST00000544983 BECN2A8MW95 431 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 PIRO00625 290 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 P4HA2O15460 535 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 B4GALT3O60512 393 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 EEF1GP26641 437 aaKnown RBP12.68□□□□□ -0.38
SNHG1-221ENST00000544983 ATICP31939 592 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 CLCNKBP51801 687 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 WNT7BP56706 349 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 ZNF445P59923 1031 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 CETN1Q12798 172 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 MYO1EQ12965 1108 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 PTPROQ16827 1216 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 ZACNQ401N2 412 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 KRT39Q6A163 491 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 PDXDC1Q6P996 788 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 LRSAM1Q6UWE0 723 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 TRIM59Q8IWR1 403 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 C1orf127Q8N9H9 656 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 KLHL23Q8NBE8 558 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 TAF4BQ92750 862 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 FAXDC2Q96IV6 333 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 MTMR12Q9C0I1 747 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 GZF1Q9H116 711 aaPredicted RBP12.68□□□□□ -0.38
SNHG1-221ENST00000544983 TMEM8AQ9HCN3 771 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 LMCD1Q9NZU5 365 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 TUBGCP4Q9UGJ1 667 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 SSX2IPQ9Y2D8 614 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 PRG3Q9Y2Y8 225 aaPredicted RBP12.68□□□□□ -0.38
SNHG1-221ENST00000544983 NUB1Q9Y5A7 615 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms