RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HSD3B2P26439 372 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TRPC1P48995 793 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 YARSP54577 528 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 CCL15Q16663 113 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RTN1Q16799 776 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GNPTABQ3T906 1256 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GJC2Q5T442 439 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 IQCF2Q8IXL9 164 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 KIRREL3Q8IZU9 778 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SYCE1Q8N0S2 351 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 ZNF713Q8N859 430 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 PIP4K2CQ8TBX8 421 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SYT15Q9BQS2 421 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 ASCC2Q9H1I8 757 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 MLXIPQ9HAP2 919 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TRPV5Q9NQA5 729 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 AGPAT5Q9NUQ2 364 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 PCMTD2Q9NV79 361 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 KBTBD4Q9NVX7 518 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 EHD2Q9NZN4 543 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SUCLA2Q9P2R7 463 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 BZW2Q9Y6E2 419 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 TMEM238LA0A1B0GVL6 79 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 PDHXO00330 501 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 AKR1B10O60218 316 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RGS20O76081 388 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GDF11O95390 407 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 XRCC5P13010 732 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 PCK1P35558 622 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 EIF4A3P38919 411 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 RANBP1P43487 201 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GUCY2FP51841 1108 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RNASELQ05823 741 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 SPIDRQ14159 915 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GRB14Q14449 540 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CNGA2Q16280 664 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SLC9C1Q4G0N8 1177 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TMEM154Q6P9G4 183 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 HELQQ8TDG4 1101 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 OTUD5Q96G74 571 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 AIFM3Q96NN9 605 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SLC26A6Q9BXS9 759 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 DPH5Q9H2P9 285 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SAR1AQ9NR31 198 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GJB4Q9NTQ9 266 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 MKS1Q9NXB0 559 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RBPJLQ9UBG7 517 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 ABT1Q9ULW3 272 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 ZNF148Q9UQR1 794 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 STXBP5LQ9Y2K9 1186 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 UTP11Q9Y3A2 253 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 SIP14410 1827 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RPTORQ8N122 1335 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SMIM31A0A1B0GVY4 71 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TMEM221A6NGB7 291 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 F5H6K3 240 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 PIK3CDO00329 1044 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 VWA5AO00534 786 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TSPY3P0CV98 308 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TSPY8P0CW00 308 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TPP2P29144 1249 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 AFMP43652 599 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CAP1Q01518 475 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 LRRC63Q05C16 580 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 KLRC3Q07444 240 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CRHR2Q13324 411 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SLC18A3Q16572 532 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TMEM259Q4ZIN3 620 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 HGSNATQ68CP4 663 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 ZNF365Q70YC5 407 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CATIPQ7Z7H3 387 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 RAB11FIP4Q86YS3 637 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TRIM42Q8IWZ5 723 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CCDC89Q8N998 374 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CKAP2Q8WWK9 683 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TRIM47Q96LD4 638 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CNOT6LQ96LI5 555 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 AK8Q96MA6 479 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 NDNQ99608 321 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 GPHNQ9NQX3 736 aaPredicted RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 ENAMQ9NRM1 1142 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 ABCF3Q9NUQ8 709 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SEC63Q9UGP8 760 aaKnown RBP5.61□□□□□ -1.51
USP28-213ENST00000544967 GJD2Q9UKL4 321 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 DUSP10Q9Y6W6 482 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CCDC162PA2VCL2 907 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 NVLO15381 856 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 DCTN3O75935 186 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 TJP3O95049 919 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 OSBPP22059 807 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CTGFP29279 349 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 HLTFQ14527 1009 aaKnown RBP eCLIP5.6□□□□□ -1.51
USP28-213ENST00000544967 RPS6KA1Q15418 735 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PKN2Q16513 984 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 TTC38Q5R3I4 469 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MAP3K21Q5TCX8 1036 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 OLFML2BQ68BL8 750 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CENPPQ6IPU0 288 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CHST3Q7LGC8 479 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PASD1Q8IV76 773 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms