RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 PCDHB6Q9Y5E3 794 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 PITPNM2Q9BZ72 1349 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 KLHL18O94889 574 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 LCP1P13796 627 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 TPI1P60174 286 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 ALDH6A1Q02252 535 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 STX3Q13277 289 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 SYDE1Q6ZW31 735 aaPredicted RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 CNGB3Q9NQW8 809 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 MAN1C1Q9NR34 630 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 HSPA13P48723 471 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 CSE1LP55060 971 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 NCKAP1LP55160 1127 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 MTMR1Q13613 665 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 VPS72Q15906 364 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 USP17L2Q6R6M4 530 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 KDELC2Q7Z4H8 507 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 DDHD1Q8NEL9 900 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 COQ7Q99807 217 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 ADGRB3O60242 1522 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 ALDH1A1P00352 501 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 VAMP7P51809 220 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 CDH6P55285 790 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 EIF3EP60228 445 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 EIF2B5Q13144 721 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 TRIM25Q14258 630 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 ARMCX4Q5H9R4 360 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 KLHL24Q6TFL4 600 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 MAP4K1Q92918 833 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 SMAD5Q99717 465 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 SERPINB13Q9UIV8 391 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 POTEFA5A3E0 1075 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 C3orf70A6NLC5 250 aaPredicted RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 A8MXQ7 604 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 FOXP2O15409 715 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 NCK2O43639 380 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 NDUFS3O75489 264 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 MTRF1O75570 445 aaKnown RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 ALFQ53S48 1182 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 DCAF4Q8WV16 495 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 TRIM63Q969Q1 353 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 NPHS2Q9NP85 383 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 PI4KBQ9UBF8 816 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 GTF2A1LQ9UNN4 478 aa10.91□□□□□ -0.66
PCDH9-204ENST00000544246 PRDM15P57071 1507 aaPredicted RBP10.91□□□□□ -0.66
PCDH9-204ENST00000544246 LGALS16A8MUM7 142 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 FGFR4P22455 802 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 SERPINB9P50453 376 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 MTFR1Q15390 333 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 NFRKBQ6P4R8 1299 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 SFR1Q86XK3 245 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PIGOQ8TEQ8 1089 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 C1orf54Q8WWF1 131 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 RAD54LQ92698 747 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 MRPL48Q96GC5 212 aaKnown RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 ZNF302Q9NR11 478 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 RAD18Q9NS91 495 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 FAM217BQ9NTX9 383 aaPredicted RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 RIC8BQ9NVN3 520 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 A0A087WWV3 80 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PDZK1P1A8MUH7 402 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 GUCA1AP43080 201 aaPredicted RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 KYAT1Q16773 422 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 VPS37AQ8NEZ2 397 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 RUBCNQ92622 972 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 GREM2Q9H772 168 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 ADGRA2Q96PE1 1338 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 EVPLLA8MZ36 301 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 KCNN4O15554 427 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PDE8BO95263 885 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 ALBP02768 609 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 ADORA1P30542 326 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PWP1Q13610 501 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 EFL1Q7Z2Z2 1120 aaKnown RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 NLRP10Q86W26 655 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 FANCEQ9HB96 536 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 TRPC7Q9HCX4 862 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 SLC16A4O15374 487 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 FTLP02792 175 aaPredicted RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 USP10Q14694 798 aaKnown RBP10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PHKG1Q16816 387 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 UGP2Q16851 508 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 TNS3Q68CZ2 1445 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 PADI6Q6TGC4 694 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 SLC10A4Q96EP9 437 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 TASP1Q9H6P5 420 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 GPR108Q9NPR9 543 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 CDC42BPBQ9Y5S2 1711 aa10.9□□□□□ -0.66
PCDH9-204ENST00000544246 RGS5O15539 181 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 AGTP01019 485 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 AP3M2P53677 418 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 COX10Q12887 443 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 ARHGEF7Q14155 803 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 SKIV2LQ15477 1246 aaKnown RBP10.9□□□□□ -0.67
PCDH9-204ENST00000544246 IFNEQ86WN2 208 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 SHCBP1Q8NEM2 672 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 PTPRN2Q92932 1015 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 SPRTNQ9H040 489 aaPredicted RBP10.9□□□□□ -0.67
PCDH9-204ENST00000544246 DDX47Q9H0S4 455 aaKnown RBP10.9□□□□□ -0.67
PCDH9-204ENST00000544246 RCOR1Q9UKL0 485 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms