RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ME1P48163 572 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 RELQ04864 619 aaPredicted RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 GALNT1Q10472 559 aaPredicted RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SMARCB1Q12824 385 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 TMPRSS9Q7Z410 1059 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 HID1Q8IV36 788 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF321PQ8N8H1 164 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SHCBP1Q8NEM2 672 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 PNKPQ96T60 521 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 PHF20Q9BVI0 1012 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 RNF38Q9H0F5 515 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 BHMT2Q9H2M3 363 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ZSWIM6Q9HCJ5 1215 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 LRFN2Q9ULH4 789 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 B4GALT4O60513 344 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 BMP10O95393 424 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 C7P10643 843 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 LONP1P36776 959 aaKnown RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 RXRGP48443 463 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 IL1RL1Q01638 556 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 PPARDQ03181 441 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 STILQ15468 1287 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SGCAQ16586 387 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 FAM209BQ5JX69 171 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 LIN54Q6MZP7 749 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 CNNM4Q6P4Q7 775 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 TPTE2Q6XPS3 522 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 GALNT5Q7Z7M9 940 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SCYL3Q8IZE3 742 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 FAM26EQ8N5C1 309 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ASZ1Q8WWH4 475 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 NOX5Q96PH1 765 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SH2B1Q9NRF2 756 aaPredicted RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ZRANB1Q9UGI0 708 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SCOCQ9UIL1 159 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ABCA3Q99758 1704 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 CD4P01730 458 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ATP1A3P13637 1013 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ETS2P15036 469 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 PORP16435 677 aaPredicted RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ALOX12P18054 663 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 MCL1Q07820 350 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 VARS2Q5ST30 1063 aaKnown RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 FASTKD5Q7L8L6 764 aaKnown RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 SLC9B2Q86UD5 537 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 UNC5CLQ8IV45 518 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 CD302Q8IX05 232 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ENGASEQ8NFI3 743 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 OR7G1Q8NGA0 311 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 EXD1Q8NHP7 514 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 NUSAP1Q9BXS6 441 aaKnown RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 GGA2Q9UJY4 613 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF536O15090 1300 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 CDHR2Q9BYE9 1310 aa9.39□□□□□ -0.91
VPS13D-212ENST00000543766 MED1Q15648 1581 aaPredicted RBP9.39□□□□□ -0.91
VPS13D-212ENST00000543766 A0A0U1RQJ8 604 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KRT87PA6NCN2 255 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 H3BRJ5 948 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 OPLAHO14841 1288 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ST8SIA5O15466 376 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ITGALP20701 1170 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 DMC1Q14565 340 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KYAT1Q16773 422 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TKFCQ3LXA3 575 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 PPP6R3Q5H9R7 873 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 RAB12Q6IQ22 244 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 PDE12Q6L8Q7 609 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MARK2Q7KZI7 788 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 DHX32Q7L7V1 743 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF598Q86UK7 904 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TTC13Q8NBP0 860 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 FAM149B1Q96BN6 582 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ZSCAN31Q96LW9 406 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TM6SF1Q9BZW5 370 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 SP140LQ9H930 580 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 CCDC87Q9NVE4 849 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 SELENONQ9NZV5 590 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 IFT80Q9P2H3 777 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MRPS7Q9Y2R9 242 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 GOLGA8KD6RF30 607 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TRDMT1O14717 391 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ATP5JP18859 108 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ASMTP46597 345 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AFF1P51825 1210 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AADACL4Q5VUY2 407 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ITPRIPL1Q6GPH6 555 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 BEND4Q6ZU67 534 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 IKBIPQ70UQ0 350 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KRT26Q7Z3Y9 468 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 FAM83AQ86UY5 434 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 IFNL2Q8IZJ0 200 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 STKLD1Q8NE28 680 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MAGEC3Q8TD91 643 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 GTF3C2Q8WUA4 911 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TRIM63Q969Q1 353 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KIAA1143Q96AT1 154 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 BTBD2Q9BX70 525 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TBC1D10AQ9BXI6 508 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 HSD3B7Q9H2F3 369 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 IFT22Q9H7X7 185 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms