RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CCDC170Q8IYT3 715 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 TRIM58Q8NG06 486 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 CCDC42Q96M95 316 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 ZNF570Q96NI8 536 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 RPS6KC1Q96S38 1066 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 RMDN3Q96TC7 470 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 TSG101Q99816 390 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 NDST4Q9H3R1 872 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 PCDH18Q9HCL0 1135 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 LUC7LQ9NQ29 371 aaKnown RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 A0A1W2PQJ5 194 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 DDX39AO00148 427 aaKnown RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 EPHB6O15197 1021 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 USO1O60763 962 aaKnown RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 SMIM24O75264 130 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 SMNDC1O75940 238 aaKnown RBP eCLIP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 LYPLA2O95372 231 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 CCNE2O96020 404 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 FUT4P22083 530 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 MAPK7Q13164 816 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 CBX3Q13185 183 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 MEA1Q16626 185 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 NSMFQ6X4W1 530 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 VSIG10LQ86VR7 867 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 BPHLQ86WA6 291 aaPredicted RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 LILRB2Q8N423 598 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 GBP7Q8N8V2 638 aaPredicted RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 AGAP11Q8TF27 550 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 RAPGEF5Q92565 580 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 NACC1Q96RE7 527 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 STRA6Q9BX79 667 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 SLC5A4Q9NY91 659 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 CYP39A1Q9NYL5 469 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 NOP53Q9NZM5 478 aaKnown RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 KCND2Q9NZV8 630 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 PKD2L1Q9P0L9 805 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 PHF24Q9UPV7 400 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 COL4A3BPQ9Y5P4 624 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 TRAPPC3O43617 180 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 RFC5P40937 340 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 UGCGQ16739 394 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 KAZNQ674X7 775 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 XRRA1Q6P2D8 792 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 MIER3Q7Z3K6 550 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 TRIM59Q8IWR1 403 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 DAW1Q8N136 415 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 ZBTB8BQ8NAP8 495 aaPredicted RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 SUN5Q8TC36 379 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 DCPSQ96C86 337 aaKnown RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 INPP4AQ96PE3 977 aaPredicted RBP8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 KRT12Q99456 494 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 TEX13BQ9BXU2 312 aa8.52□□□□□ -1.05
PDLIM5-221ENST00000542407 P4HBP07237 508 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PLEKP08567 350 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 HSPA8P11142 646 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GNAT1P11488 350 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GAP43P17677 238 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PIK3CAP42336 1068 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 CCT8P50990 548 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 LRP8Q14114 963 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 KNOP1Q1ED39 458 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 C10orf62Q5T681 223 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ALKBH2Q6NS38 261 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GALNT15Q8N3T1 639 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GSDMBQ8TAX9 411 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PRCCQ92733 491 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ZMAT2Q96NC0 199 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 IER2Q9BTL4 223 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 BEGAINQ9BUH8 593 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 IFIH1Q9BYX4 1025 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 EBF2Q9HAK2 575 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TBC1D22BQ9NU19 505 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TBK1Q9UHD2 729 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GGT7Q9UJ14 662 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 DBR1Q9UK59 544 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 NOVA2Q9UNW9 492 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TMED5Q9Y3A6 229 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 HYOU1Q9Y4L1 999 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 A0A0G2JLL6 359 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TRAF5O00463 557 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PDXKO00764 312 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 EIF3DO15371 548 aaKnown RBP eCLIP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TGFB1I1O43294 461 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 BUB1O43683 1085 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 EVI5O60447 810 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 STAM2O75886 525 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 DNAJC8O75937 253 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 NR3C2P08235 984 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 MYCLP12524 364 aaPredicted RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 CCND2P30279 289 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 CTNNA1P35221 906 aaKnown RBP8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 OXCT1P55809 520 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PHEXP78562 749 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 KCNMA1Q12791 1236 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 COX10Q12887 443 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 MOGSQ13724 837 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 SLMAPQ14BN4 828 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ARHGEF16Q5VV41 709 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 LBX2Q6XYB7 198 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 PRRT2Q7Z6L0 340 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms