RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 CMTR1Q8N1G2 835 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 GIMAP8Q8ND71 665 aaPredicted RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 FAM151AQ8WW52 585 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 P2RX5Q93086 422 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 PYM1Q9BRP8 204 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 TUT1Q9H6E5 874 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 SLC12A7Q9Y666 1083 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 CNTNAP1P78357 1384 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 ROBO3Q96MS0 1386 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 FOXO6A8MYZ6 492 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 KLRC4O43908 158 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 DEXIO95424 95 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 FGFR4P22455 802 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 CCNE1P24864 410 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 CCR3P51677 355 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 PTGDRQ13258 359 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 SLC9C1Q4G0N8 1177 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 PDCD4Q53EL6 469 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 RASGEF1CQ8N431 466 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 CSRNP1Q96S65 589 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 ERP44Q9BS26 406 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 EIF2AQ9BY44 585 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 DNAJC18Q9H819 358 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 USP29Q9HBJ7 922 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 HACL1Q9UJ83 578 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 TNKSO95271 1327 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 MYPNQ86TC9 1320 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 PITPNM2Q9BZ72 1349 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 RIPK2O43353 540 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ZNF862O60290 1169 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 TLR2O60603 784 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FOXN2P32314 431 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 NEK2P51955 445 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FKBP1CQ5VVH2 108 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 CRACR2BQ8N4Y2 399 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SAMD3Q8N6K7 520 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 TRIM11Q96F44 468 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FNBP1Q96RU3 617 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ZSCAN10Q96SZ4 725 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 STK33Q9BYT3 514 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ZNF287Q9HBT7 754 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 IL17RBQ9NRM6 502 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SNX24Q9Y343 169 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 NR2E1Q9Y466 385 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 A0A087X0T9 212 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 BICDL2A1A5D9 508 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SPTLC1O15269 473 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SERPING1P05155 500 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FAM228BP0C875 321 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 TSPY3P0CV98 308 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 TSPY8P0CW00 308 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SHMT1P34896 483 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 LIFRP42702 1097 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 POLR2FP61218 127 aaKnown RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ATP2C1P98194 919 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 KIF22Q14807 665 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 WTAPQ15007 396 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SEC23AQ15436 765 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SLC18A3Q16572 532 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 LONRF1Q17RB8 773 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 TAF1BQ53T94 588 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ANGEL2Q5VTE6 544 aaKnown RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 Q6ZNX1 250 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 RBM44Q6ZP01 1051 aaKnown RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ACAD11Q709F0 780 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 CCDC84Q86UT8 332 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FAM83AQ86UY5 434 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 NUP93Q8N1F7 819 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 ENAHQ8N8S7 591 aaPredicted RBP10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 LRRC57Q8N9N7 239 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SHISA4Q96DD7 197 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 SYNPO2Q9UMS6 1093 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 FADS3Q9Y5Q0 445 aa10.05□□□□□ -0.8
CTNNA1-243ENST00000540387 CDK5RAP2Q96SN8 1893 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 GLTPD2A6NH11 291 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 E9PBE3 544 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 EXOC3O60645 756 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 RHOBTB3O94955 611 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 DR1Q01658 176 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 RELAQ04206 551 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 MOGSQ13724 837 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 IL17AQ16552 155 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 BBS5Q8N3I7 341 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 PHF12Q96QT6 1004 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 EBF3Q9H4W6 596 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 ANGPTL2Q9UKU9 493 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 STARD13Q9Y3M8 1113 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 FAM32AQ9Y421 112 aaKnown RBP10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 ATRNL1Q5VV63 1379 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 TIAM2Q8IVF5 1701 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 DICER1Q9UPY3 1922 aaKnown RBP10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 GSC2O15499 205 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 BRAFP15056 766 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 AKR1B1P15121 316 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 CRABP2P29373 138 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 CDC16Q13042 620 aa10.04□□□□□ -0.8
CTNNA1-243ENST00000540387 GRM2Q14416 872 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms