RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	NXF3	Q9H4D5	531 aa	Known RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	PTPRH	Q9HD43	1115 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM207A	Q9NSI2	230 aa	Predicted RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	TMEM161A	Q9NX61	479 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	AIPL1	Q9NZN9	384 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	COLQ	Q9Y215	455 aa	Predicted RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	HES2	Q9Y543	173 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	IPP	Q9Y573	584 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	GRXCR1	A8MXD5	290 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	TULP1	O00294	542 aa	Predicted RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ABLIM1	O14639	778 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	P4HA2	O15460	535 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	TGFB1I1	O43294	461 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	N4BP1	O75113	896 aa	Known RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ZNF623	O75123	536 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	LCA5L	O95447	670 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	FGFR1	P11362	822 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ITGA4	P13612	1032 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	KRT13	P13646	458 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ATF7	P17544	494 aa	Predicted RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	PROZ	P22891	400 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	RABGGTB	P53611	331 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	OSTN	P61366	133 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ENPEP	Q07075	957 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	MCL1	Q07820	350 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	KCNMA1	Q12791	1236 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	KIF5A	Q12840	1032 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	MTF1	Q14872	753 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	SLFN12L	Q6IEE8	588 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	PDXDC1	Q6P996	788 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	USP37	Q86T82	979 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ZNF598	Q86UK7	904 aa	Known RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	THNSL1	Q8IYQ7	743 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	PDCL2	Q8N4E4	241 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	MNS1	Q8NEH6	495 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	POMGNT1	Q8WZA1	660 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	TOP1MT	Q969P6	601 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	YME1L1	Q96TA2	773 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	DESI2	Q9BSY9	194 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	ELAC1	Q9H777	363 aa	Known RBP	10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	LZTFL1	Q9NQ48	299 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	PARP2	Q9UGN5	583 aa		10.21	□□□□□ -0.77
NXF1-209	ENST00000531474	TET1	Q8NFU7	2136 aa		10.21	□□□□□ -0.78
NXF1-209	ENST00000531474		A0A0B4J269	797 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	MEIS3P2	A8K0S8	358 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	EFCAB8	A8MWE9	144 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	OGT	O15294	1046 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	PMM2	O15305	246 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	HOXA2	O43364	376 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	TLL1	O43897	1013 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	AKR1B10	O60218	316 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	AKAP3	O75969	853 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	RECQL4	O94761	1208 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	GJB5	O95377	273 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	EOMES	O95936	686 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	RFX1	P22670	979 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	AKAP5	P24588	427 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	GRM5	P41594	1212 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	GATM	P50440	423 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	PAN2	Q504Q3	1202 aa	Known RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	SEZ6	Q53EL9	994 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	ZNF569	Q5MCW4	686 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	CCDC122	Q5T0U0	273 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	GLB1L	Q6UWU2	654 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	AGMO	Q6ZNB7	445 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	INTS8	Q75QN2	995 aa	Known RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	MRPL10	Q7Z7H8	261 aa	Known RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	VPS36	Q86VN1	386 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	ABI1	Q8IZP0	508 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	RNF10	Q8N5U6	811 aa	Known RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	CEP112	Q8N8E3	955 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	CEP120	Q8N960	986 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	HELQ	Q8TDG4	1101 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	BAP1	Q92560	729 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	NAPG	Q99747	312 aa	Predicted RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	CBWD1	Q9BRT8	395 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	CCDC94	Q9BW85	323 aa	Predicted RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	LSM14B	Q9BX40	385 aa	Known RBP	10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	HAPLN2	Q9GZV7	340 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	RNF39	Q9H2S5	420 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	PCIF1	Q9H4Z3	704 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	RSAD1	Q9HA92	442 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	AGPAT3	Q9NRZ7	376 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	SNTG2	Q9NY99	539 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	KLK14	Q9P0G3	267 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	INPP5F	Q9Y2H2	1132 aa		10.2	□□□□□ -0.78
NXF1-209	ENST00000531474	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	10.19	□□□□□ -0.78
NXF1-209	ENST00000531474		A0A1W2PPC1	479 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	LRRC53	A6NM62	1247 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	TBKBP1	A7MCY6	615 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	KIAA0391	O15091	583 aa	Known RBP	10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	CLIC2	O15247	247 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	EXOC3	O60645	756 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	DGKI	O75912	1065 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	GFPT2	O94808	682 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	TUBB	P07437	444 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	GART	P22102	1010 aa		10.19	□□□□□ -0.78
NXF1-209	ENST00000531474	ADSS	P30520	456 aa		10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms