RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 ARGLU1Q9NWB6 273 aaPredicted RBP6.12□□□□□ -1.43
USP47-204ENST00000525078 UCKL1Q9NWZ5 548 aa6.12□□□□□ -1.43
USP47-204ENST00000525078 ZNF212Q9UDV6 495 aa6.12□□□□□ -1.43
USP47-204ENST00000525078 SRRDQ9UH36 339 aa6.12□□□□□ -1.43
USP47-204ENST00000525078 DUSP13Q9UII6 198 aa6.12□□□□□ -1.43
USP47-204ENST00000525078 ZHX1Q9UKY1 873 aaPredicted RBP6.12□□□□□ -1.43
USP47-204ENST00000525078 FAM95CA0A1B0GW59 222 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 A0A1W2PQ27 194 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 A0A1W2PQ64 194 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 A0A1W2PQC6 194 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 A0A1W2PQD8 194 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 TMEM82A0PJX8 343 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 TRIM43BA6NCK2 446 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 CLCA1A8K7I4 914 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 CLGNO14967 610 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 AKR1B10O60218 316 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 ITGB2P05107 769 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 HNRNPA1P09651 372 aaKnown RBP eCLIP6.11□□□□□ -1.43
USP47-204ENST00000525078 GLB1P16278 677 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 MALP21145 153 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 CARSP49589 748 aaKnown RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 SNX16P57768 344 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 SESN2P58004 480 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 CHRNDQ07001 517 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 SLC13A2Q13183 592 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 SNAPC2Q13487 334 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 RAB39AQ14964 217 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 NFKBIBQ15653 356 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 FLYWCH1Q4VC44 716 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 SEZ6L2Q6UXD5 910 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 C1orf229Q6ZS94 237 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 KDELC2Q7Z4H8 507 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 FAM129CQ86XR2 697 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 GALNT13Q8IUC8 556 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 TMEM52Q8NDY8 209 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 GPR156Q8NFN8 814 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.11□□□□□ -1.43
USP47-204ENST00000525078 IPCEF1Q8WWN9 437 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 EZH1Q92800 747 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 TRIM43Q96BQ3 446 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 FCRL2Q96LA5 508 aaPredicted RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 FMNL2Q96PY5 1086 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 DMRTA2Q96SC8 542 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 YME1L1Q96TA2 773 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 PDCD2LQ9BRP1 358 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 ZWILCHQ9H900 591 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 C1GALT1Q9NS00 363 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 TMEM160Q9NX00 188 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 RGL1Q9NZL6 768 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 CEP72Q9P209 647 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 ASH2LQ9UBL3 628 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 FTSJ1Q9UET6 329 aa6.11□□□□□ -1.43
USP47-204ENST00000525078 ADD3Q9UEY8 706 aaKnown RBP6.11□□□□□ -1.43
USP47-204ENST00000525078 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.11□□□□□ -1.43
USP47-204ENST00000525078 GTPBP10A4D1E9 387 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 H7C0S8 307 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 MASP2O00187 686 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 BTN3A1O00481 513 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 OPHN1O60890 802 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ADAM23O75077 832 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ACTL6BO94805 426 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ENDOD1O94919 500 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 NTRK1P04629 796 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 GYS1P13807 737 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 HOXC13P31276 330 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 GALK1P51570 392 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CCR5P51681 352 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CCR9P51686 369 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 PRKAA2P54646 552 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 SOX8P57073 446 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ACTR2P61160 394 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 TARDBPQ13148 414 aaKnown RBP eCLIP6.1□□□□□ -1.43
USP47-204ENST00000525078 PPP2R5CQ13362 524 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 COL9A3Q14050 684 aaPredicted RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 AOC3Q16853 763 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 VWA3BQ502W6 1294 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CCDC178Q5BJE1 867 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 EMC4Q5J8M3 183 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 SLC9C2Q5TAH2 1124 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ARL6IP4Q66PJ3 421 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 ARHGAP27Q6ZUM4 889 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ZNF765Q7L2R6 523 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 PPP1R3BQ86XI6 285 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 PLD6Q8N2A8 252 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 CEP70Q8NHQ1 597 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 PHOSPHO1Q8TCT1 267 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CCHCR1Q8TD31 782 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CALML6Q8TD86 181 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CLEC4DQ8WXI8 215 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 TNPO1Q92973 898 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 DCAF5Q96JK2 942 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 HIST1H2AHQ96KK5 128 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 CNDP2Q96KP4 475 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 SNX27Q96L92 541 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 MRGPRX4Q96LA9 322 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 HEXIM2Q96MH2 286 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 HIST1H2AJQ99878 128 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 ADPGKQ9BRR6 497 aa6.1□□□□□ -1.43
USP47-204ENST00000525078 MRPL9Q9BYD2 267 aaKnown RBP6.1□□□□□ -1.43
USP47-204ENST00000525078 TRIM54Q9BYV2 358 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms