RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MAGEB18Q96M61 343 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 LBHD1Q9BQE6 289 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 GPRC5CQ9NQ84 441 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 TAS2R14Q9NYV8 317 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 HEY1Q9Y5J3 304 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 AFDNP55196 1824 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 MED1Q15648 1581 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 CCDC195A0A1B0GUA6 201 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 PPFIA2O75334 1257 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 TTC4O95801 387 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 HLA-DRAP01903 254 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 RARAP10276 462 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 NCF2P19878 526 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SPDYCQ5MJ68 293 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ARHGEF19Q8IW93 802 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 WDR75Q8IWA0 830 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 KIRREL3Q8IZU9 778 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MIPOL1Q8TD10 442 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 KRT35Q92764 455 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SCYL1Q96KG9 808 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 NALCNQ8IZF0 1738 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ZBTB39O15060 712 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MUTP22033 750 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 TARSP26639 723 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SH3BGRP55822 239 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 LVRNQ6Q4G3 990 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 HIPK4Q8NE63 616 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 KLF6Q99612 283 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC13A1Q9BZW2 595 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 QTRT2Q9H974 415 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 RPF1Q9H9Y2 349 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ASNSD1Q9NWL6 643 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 TBX20Q9UMR3 447 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 DDTLA6NHG4 134 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 O00370 1275 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 HNRNPCL1O60812 293 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 DGAT1O75907 488 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MYCNP04198 464 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 FLT3P36888 993 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC12A2P55011 1212 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MTM1Q13496 603 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 PPP6R3Q5H9R7 873 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ERMARDQ5T6L9 678 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 C1orf146Q5VVC0 180 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 SNRNP48Q6IEG0 339 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 CCNYQ8ND76 341 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 HES6Q96HZ4 224 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 GMCL1Q96IK5 515 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 AGBL1Q96MI9 1066 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MCEEQ96PE7 176 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 POP1Q99575 1024 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 PHTF1Q9UMS5 762 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 RASSF10A6NK89 507 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 DNAJC8O75937 253 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MARK3P27448 753 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ECE1P42892 770 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MARSP56192 900 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ASPHQ12797 758 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 NFX1Q12986 1120 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 MYBPC2Q14324 1141 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 CRYMQ14894 314 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF677Q86XU0 584 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 DTX3LQ8TDB6 740 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 CENPTQ96BT3 561 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 NLRP4Q96MN2 994 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 TTC1Q99614 292 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 TSSK1BQ9BXA7 367 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 VCX3AQ9NNX9 186 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ZHX2Q9Y6X8 837 aa8.89□□□□□ -0.99
LIMCH1-216ENST00000512820 ASTN1O14525 1302 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 CCDC22O60826 627 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 RRM1P23921 792 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 TAP1Q03518 808 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 OTOP1Q7RTM1 612 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 NUDCD3Q8IVD9 361 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ACER1Q8TDN7 264 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF302Q9NR11 478 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 LMO7Q8WWI1 1683 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 KIAA0391O15091 583 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 KRT3P12035 628 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 PGM1P36871 562 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 EIF3EP60228 445 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ROR1Q01973 937 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 MAPK6Q16659 721 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 C3orf62Q6ZUJ4 267 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 PDZD4Q76G19 769 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 C7orf31Q8N865 590 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 FEZF2Q8TBJ5 459 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 TAS1R2Q8TE23 839 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF384Q8TF68 577 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 DHX38Q92620 1227 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM149B1Q96BN6 582 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 STAMBPL1Q96FJ0 436 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 SMYD3Q9H7B4 428 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 PPCSQ9HAB8 311 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 FBXO28Q9NVF7 368 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 NAALADL1Q9UQQ1 740 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 KIF1AQ12756 1690 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 CAPN9O14815 690 aa8.88□□□□□ -0.99
LIMCH1-216ENST00000512820 NOL3O60936 208 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms