RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 IFNL3Q8IZI9 196 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 C12orf42Q96LP6 360 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 YIPF4Q9BSR8 244 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 C11orf84Q9BUA3 381 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-208ENST00000497026 IL25Q9H293 177 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 NTMQ9P121 344 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 SWAP70Q9UH65 585 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 COA3Q9Y2R0 106 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-208ENST00000497026 COL11A1P12107 1806 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-208ENST00000497026 PLIN4Q96Q06 1357 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 GOLGA6L22H0YM25 854 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 AGRPO00253 132 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF500O60304 480 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-208ENST00000497026 MSCO60682 206 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 VCAM1P19320 739 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 SDSP20132 328 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 PLP2Q04941 152 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 PKN2Q16513 984 aaKnown RBP5.7□□□□□ -1.5
CSMD3-208ENST00000497026 KIAA1755Q5JYT7 1200 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 UBXN11Q5T124 520 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 ACBD5Q5T8D3 534 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-208ENST00000497026 TMEM179Q6ZVK1 233 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 USP53Q70EK8 1073 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 MIB1Q86YT6 1006 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 RIOX2Q8IUF8 465 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 HSCBQ8IWL3 235 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 ARRDC4Q8NCT1 418 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 SMCR8Q8TEV9 937 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-208ENST00000497026 CCDC140Q96MF4 163 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 JAM3Q9BX67 310 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 KIAA1683Q9H0B3 1180 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 TSPYL1Q9H0U9 437 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 TXNRD2Q9NNW7 524 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 CABP5Q9NP86 173 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 HELLSQ9NRZ9 838 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 PPARGC1AQ9UBK2 798 aaKnown RBP5.7□□□□□ -1.5
CSMD3-208ENST00000497026 PTPN22Q9Y2R2 807 aa5.7□□□□□ -1.5
CSMD3-208ENST00000497026 CCDC171Q6TFL3 1326 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 IGKV6D-41A0A0C4DH26 115 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 CCDC66A2RUB6 948 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 CCDC85CA6NKD9 419 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 MPHOSPH10O00566 681 aaKnown RBP5.69□□□□□ -1.5
CSMD3-208ENST00000497026 KLF4O43474 513 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 NOBOXO60393 691 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 PRDM1O75626 825 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 CAPNS1P04632 268 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 CNR2P34972 360 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 THBS2P35442 1172 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 SLC6A11P48066 632 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 TDO2P48775 406 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 USP14P54578 494 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 HERVK_113P62684 666 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 ICA1Q05084 483 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 PPARAQ07869 468 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 FAM110CQ1W6H9 321 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 MCMDC2Q4G0Z9 681 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 TTC22Q5TAA0 569 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 STEAP3Q658P3 488 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 SKAP1Q86WV1 359 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF761Q86XN6 746 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-208ENST00000497026 TICAM2Q86XR7 235 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 FAM126BQ8IXS8 530 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 AMOTL1Q8IY63 956 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 Q8N1Y9 231 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 ANKRD13CQ8N6S4 541 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 LINC00482Q8N8I6 264 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 KCTD13Q8WZ19 329 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 RILPL2Q969X0 211 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 CCDC17Q96LX7 622 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 P2RX7Q99572 595 aaKnown RBP5.69□□□□□ -1.5
CSMD3-208ENST00000497026 NAPBQ9H115 298 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 TMOD4Q9NZQ9 345 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.69□□□□□ -1.5
CSMD3-208ENST00000497026 TMX2Q9Y320 296 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 PTCH2Q9Y6C5 1203 aa5.69□□□□□ -1.5
CSMD3-208ENST00000497026 ZMYM6O95789 1325 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF236Q9UL36 1845 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 BLACEA4D250 179 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 PRODHO43272 600 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 DLX3O60479 287 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 CNMDO75829 334 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 APPP05067 770 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 HSPD1P10809 573 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 EEF2P13639 858 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 PSMC4P43686 418 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 GCLCP48506 637 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ITGA1P56199 1179 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 GJA9P57773 515 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 IRX3P78415 501 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 HMGN5P82970 282 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 PRKCZQ05513 592 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 PABPC4Q13310 644 aaKnown RBP eCLIP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 CR1LQ2VPA4 569 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 DNTTIP2Q5QJE6 756 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 MCTP2Q6DN12 878 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 CWC27Q6UX04 472 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 CATSPERGQ6ZRH7 1159 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ZC3H18Q86VM9 953 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 RBM12BQ8IXT5 1001 aaKnown RBP5.68□□□□□ -1.5
CSMD3-208ENST00000497026 SLC43A3Q8NBI5 491 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms