RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 FAM13AO94988 1023 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 KRT18P05783 430 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 PROZP22891 400 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 GRM5P41594 1212 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 MTHFRP42898 656 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 CLCNKBP51801 687 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 YARSP54577 528 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 SOX4Q06945 474 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 HERC4Q5GLZ8 1057 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 RTP2Q5QGT7 225 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 PLA2G2CQ5R387 149 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 ATAT1Q5SQI0 421 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 FAM171A1Q5VUB5 890 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 MPZL3Q6UWV2 235 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 HAUS6Q7Z4H7 955 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 APBB1IPQ7Z5R6 666 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 TMEM130Q8N3G9 435 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 KCTD17Q8N5Z5 321 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 RIPOR3Q96MK2 946 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 ZMAT2Q96NC0 199 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 PPP1R10Q96QC0 940 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 USP28Q96RU2 1077 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 CCSER1Q9C0I3 900 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 RXFP1Q9HBX9 757 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 MAN1C1Q9NR34 630 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 KCND2Q9NZV8 630 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 LARSQ9P2J5 1176 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 TFIP11Q9UBB9 837 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 SRPRBQ9Y5M8 271 aaKnown RBP11.67□□□□□ -0.54
COL6A3-214ENST00000493608 TECTAO75443 2155 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 ZMYM2Q9UBW7 1377 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 SF3B1O75533 1304 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 C2CD4DB7Z1M9 353 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 I3L4J1 428 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 TULP1O00294 542 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 MEFVO15553 781 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 SLC26A4O43511 780 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 TGM5O43548 720 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 RFPL2O75678 378 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 B3GAT3O94766 335 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 ADH1AP07327 375 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 MCF2P10911 925 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 NMT1P30419 496 aaKnown RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 DDIT3P35638 169 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 BRCC3P46736 316 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 NCKAP1LP55160 1127 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 FOXD4L6Q3SYB3 417 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 CD300LGQ6UXG3 332 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 ALKAL1Q6UXT8 129 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 FOXD4L3Q6VB84 417 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 DYMQ7RTS9 669 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 LARP4BQ92615 738 aaKnown RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 SNX21Q969T3 373 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 C18orf25Q96B23 403 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-214ENST00000493608 BICD1Q96G01 975 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 ACAP3Q96P50 834 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 TTPALQ9BTX7 342 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 HAPLN2Q9GZV7 340 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 SFXN1Q9H9B4 322 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 KCNG1Q9UIX4 513 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 ODF2LQ9ULJ1 636 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 SLC27A5Q9Y2P5 690 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 MYH15Q9Y2K3 1946 aa11.66□□□□□ -0.54
COL6A3-214ENST00000493608 CCDC195A0A1B0GUA6 201 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 K7ENM7 598 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 CLDN3O15551 220 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 ADAM12O43184 909 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 TRAK2O60296 914 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 TOM1L1O75674 476 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 GLUD1P00367 558 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 ZXDAP98168 799 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 SPAG1Q07617 926 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 NOLC1Q14978 699 aaKnown RBP eCLIP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 SLC39A14Q15043 492 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 SLC10A6Q3KNW5 377 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 ZC2HC1CQ53FD0 456 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 XKR4Q5GH76 650 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 RRAGBQ5VZM2 374 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 DCLRE1AQ6PJP8 1040 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 GPR149Q86SP6 731 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 HSCBQ8IWL3 235 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 C3orf58Q8NDZ4 430 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 LNX1Q8TBB1 728 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 EDAQ92838 391 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 SNX27Q96L92 541 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 NECTIN4Q96NY8 510 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 CLSTN3Q9BQT9 956 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 ZSCAN16Q9H4T2 348 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 PARVGQ9HBI0 331 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 TOPORSQ9NS56 1045 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 CCDC39Q9UFE4 941 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 TBX20Q9UMR3 447 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 NR2E1Q9Y466 385 aa11.65□□□□□ -0.54
COL6A3-214ENST00000493608 PDCD11Q14690 1871 aaKnown RBP11.65□□□□□ -0.54
COL6A3-214ENST00000493608 MYMKA6NI61 221 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 PRR33A8MZF0 331 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 TBCAO75347 108 aaKnown RBP11.64□□□□□ -0.55
COL6A3-214ENST00000493608 HSP90AA1P07900 732 aaKnown RBP11.64□□□□□ -0.55
COL6A3-214ENST00000493608 CD46P15529 392 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 TNFSF9P41273 254 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms