RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MAN1C1Q9NR34 630 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 SCOCQ9UIL1 159 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 RUVBL1Q9Y265 456 aaKnown RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 USP15Q9Y4E8 981 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-208ENST00000490788 NOX1Q9Y5S8 564 aa2.84□□□□□ -1.95
HMGB1-208ENST00000490788 MYBBP1AQ9BQG0 1328 aaKnown RBP2.84□□□□□ -1.96
HMGB1-208ENST00000490788 WASHC2CQ9Y4E1 1318 aa2.84□□□□□ -1.96
HMGB1-208ENST00000490788 FHAD1B1AJZ9 1412 aa2.84□□□□□ -1.96
HMGB1-208ENST00000490788 ARHGEF40Q8TER5 1519 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 NHSL1Q5SYE7 1610 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TMEM191CA6NGB0 347 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 GABRDO14764 452 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 KIAA0391O15091 583 aaKnown RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 NARSO43776 548 aaKnown RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ERN1O75460 977 aaKnown RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ITGB1P05556 798 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ALOX15P16050 662 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 C5AR1P21730 350 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ACVRL1P37023 503 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 RECQLP46063 649 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ALDH1A3P47895 512 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 CHN2P52757 468 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TGFB2P61812 414 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 RBM6P78332 1123 aaKnown RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 KRT85P78386 507 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 PPP3CAQ08209 521 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 PCBP2Q15366 365 aaKnown RBP eCLIP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 INAVAQ3KP66 663 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 C1QL3Q5VWW1 255 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TSHZ3Q63HK5 1081 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 GPRIN1Q7Z2K8 1008 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 CBARPQ8N350 705 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 AOPEPQ8N6M6 819 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 NLGN4YQ8NFZ3 816 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-208ENST00000490788 SLC35B2Q8TB61 432 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TMX3Q96JJ7 454 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TEKT5Q96M29 485 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 MRIQ9BWK5 157 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 SLC13A1Q9BZW2 595 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 SLITRK6Q9H5Y7 841 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 CYP4F11Q9HBI6 524 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 AKIP1Q9NQ31 210 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 AASDHPPTQ9NRN7 309 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 RNF181Q9P0P0 153 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 FZD1Q9UP38 647 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ACTL7AQ9Y615 435 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 JCADQ9P266 1359 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 TRAPPC8Q9Y2L5 1435 aa2.83□□□□□ -1.96
HMGB1-208ENST00000490788 ALKQ9UM73 1620 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 DRGXA6NNA5 263 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 LEFTY2O00292 366 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 NCR1O76036 304 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 NDUFA10O95299 355 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 IL33O95760 270 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 MTHFD1P11586 935 aaKnown RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 HSPA6P17066 643 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 VCAM1P19320 739 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 SMARCA1P28370 1054 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 GUCY1A2P33402 732 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 CDC42EP1Q00587 391 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 EXOSC10Q01780 885 aaKnown RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 RAB39AQ14964 217 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 UBXN2BQ14CS0 331 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 SEPT2Q15019 361 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 CCDC157Q569K6 752 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 BRDTQ58F21 947 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 THEMIS2Q5TEJ8 643 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 OTUD7BQ6GQQ9 843 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 KRTAP5-11Q6L8G4 156 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 ARMC6Q6NXE6 501 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 LRRC55Q6ZSA7 311 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 UBE3BQ7Z3V4 1068 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 DEFB132Q7Z7B7 95 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 TTC7BQ86TV6 843 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 LCORLQ8N3X6 602 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 FITM2Q8N6M3 262 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 HOXB13Q92826 284 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 CLPTM1LQ96KA5 538 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 PRRX2Q99811 253 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 PACSIN1Q9BY11 444 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 SCAND2PQ9GZW5 306 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 C11orf54Q9H0W9 315 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 RNPEPQ9H4A4 650 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 GNL3LQ9NVN8 582 aaKnown RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 MTO1Q9Y2Z2 717 aaKnown RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 LUC7L2Q9Y383 392 aaKnown RBP2.82□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHA13Q9Y5I0 950 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 FPGT-TNNI3KV9GXZ4 949 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 TNIKQ9UKE5 1360 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 UACAQ9BZF9 1416 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 RUSC2Q8N2Y8 1516 aa2.82□□□□□ -1.96
HMGB1-208ENST00000490788 TCRBV7S2A1N4TA0A589 114 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 CCDC154A6NI56 674 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 HTRA2O43464 458 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SGTAO43765 313 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA12O60330 932 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 RAMP2O60895 175 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 HAUS5O94927 633 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 GPANK1O95872 356 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SLPIP03973 132 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms