RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 CALM3P0DP25 149 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 ITGA4P13612 1032 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 SMARCA1P28370 1054 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 FCHO2Q0JRZ9 810 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 KARSQ15046 597 aaKnown RBP8.14□□□□□ -1.11
COL9A1-209ENST00000489861 TARBP2Q15633 366 aaKnown RBP8.14□□□□□ -1.11
COL9A1-209ENST00000489861 FSTL4Q6MZW2 842 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 PDXDC1Q6P996 788 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 CASC1Q6TDU7 716 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 SLCO6A1Q86UG4 719 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 GPIHBP1Q8IV16 184 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 HS6ST3Q8IZP7 471 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 FAM181AQ8N9Y4 354 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 OR2I1PQ8NGU4 316 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 CHFRQ96EP1 664 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 DCBLD2Q96PD2 775 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 MAP3K14Q99558 947 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 EIF2AQ9BY44 585 aaKnown RBP8.14□□□□□ -1.11
COL9A1-209ENST00000489861 INO80BQ9C086 356 aaPredicted RBP8.14□□□□□ -1.11
COL9A1-209ENST00000489861 MINDY3Q9H8M7 445 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 IPPQ9Y573 584 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 ARID2Q68CP9 1835 aa8.14□□□□□ -1.11
COL9A1-209ENST00000489861 RELNP78509 3460 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 IGKV6-21A0A0C4DH24 114 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 hCG_1642624A0A1W2PR95 340 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 ARHGEF37A1IGU5 675 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TMEM150BA6NC51 233 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TRABD2BA6NFA1 517 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 FAM86B1E9PN63 330 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 RNF40O75150 1001 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 DDAH1O94760 285 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 WISP1O95388 367 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 OATP04181 439 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 NTRK1P04629 796 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 FAM86B2P0C5J1 330 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 IGFBP6P24592 240 aaPredicted RBP8.13□□□□□ -1.11
COL9A1-209ENST00000489861 DHPSP49366 369 aaPredicted RBP8.13□□□□□ -1.11
COL9A1-209ENST00000489861 PRKCEQ02156 737 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TNK2Q07912 1038 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TRIP6Q15654 476 aaKnown RBP8.13□□□□□ -1.11
COL9A1-209ENST00000489861 UGCGQ16739 394 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TMEM196Q5HYL7 178 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TTC22Q5TAA0 569 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 RTL10Q7L3V2 364 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 ZNF410Q86VK4 478 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 RHPN2Q8IUC4 686 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 DAGLBQ8NCG7 672 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 FAM200AQ8TCP9 573 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 RRP36Q96EU6 259 aaKnown RBP8.13□□□□□ -1.11
COL9A1-209ENST00000489861 FAM167AQ96KS9 214 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 NLRP4Q96MN2 994 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 TMEM209Q96SK2 561 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 SH2D3AQ9BRG2 576 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 SPZ1Q9BXG8 430 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 NUSAP1Q9BXS6 441 aaKnown RBP8.13□□□□□ -1.11
COL9A1-209ENST00000489861 UBN1Q9NPG3 1134 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 EBF1Q9UH73 591 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 NBASA2RRP1 2371 aa8.13□□□□□ -1.11
COL9A1-209ENST00000489861 UTP20O75691 2785 aaKnown RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 ITPR2Q14571 2701 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 IGLV3-22A0A075B6J6 115 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 IPO5O00410 1097 aaKnown RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 ZNF197O14709 1029 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 CAPN9O14815 690 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 SH3BP5O60239 455 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 ATG13O75143 517 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 KIF4AO95239 1232 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 EGFP01133 1207 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 PSAPP07602 524 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 PTGER3P43115 390 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 DGKEP52429 567 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 CDC42EP1Q00587 391 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 CAMK2BQ13554 666 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 HSP90AA2PQ14568 343 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 COLEC12Q5KU26 742 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 RNF20Q5VTR2 975 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 ZNF746Q6NUN9 644 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 SLC23A3Q6PIS1 610 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 SYNE3Q6ZMZ3 975 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 TOGARAM2Q6ZUX3 1019 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 PDZD4Q76G19 769 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 PLA2G4DQ86XP0 818 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 YAF2Q8IY57 180 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 TMEM87BQ96K49 555 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 FCRL3Q96P31 734 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 TPSD1Q9BZJ3 242 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 SEMA4CQ9C0C4 833 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 FBRSL1Q9HCM7 1045 aaKnown RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 POLMQ9NP87 494 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 NRBP2Q9NSY0 501 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 SUCLA2Q9P2R7 463 aaPredicted RBP8.12□□□□□ -1.11
COL9A1-209ENST00000489861 MTRRQ9UBK8 725 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 DNMT3LQ9UJW3 386 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 PCDHA10Q9Y5I2 948 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 CDY1Q9Y6F8 540 aa8.12□□□□□ -1.11
COL9A1-209ENST00000489861 CACNA1DQ01668 2161 aa8.11□□□□□ -1.11
COL9A1-209ENST00000489861 ATXN2Q99700 1313 aaKnown RBP8.11□□□□□ -1.11
COL9A1-209ENST00000489861 CCDC69A6NI79 296 aa8.11□□□□□ -1.11
COL9A1-209ENST00000489861 OPHN1O60890 802 aa8.11□□□□□ -1.11
COL9A1-209ENST00000489861 STBD1O95210 358 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms