RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 IRF2BP2Q7Z5L9 587 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 SMG8Q8ND04 991 aaKnown RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 KIF12Q96FN5 646 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 OSBPL7Q9BZF2 842 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 DEF6Q9H4E7 631 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 TRMT1Q9NXH9 659 aaKnown RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 ADGRG1Q9Y653 693 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 BZW2Q9Y6E2 419 aaKnown RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 USP27XA6NNY8 438 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 CD4P01730 458 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 CCDC175P0C221 793 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 ZSCAN20P17040 1043 aaPredicted RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 PRKCIP41743 596 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 MNX1P50219 401 aaPredicted RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 ELMO3Q96BJ8 720 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 APOBEC3GQ9HC16 384 aaKnown RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 FAM105AQ9NUU6 356 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 CNTN3Q9P232 1028 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 RBAK-RBAKDNI3L0D1 243 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 TLR3O15455 904 aaKnown RBP23.3■■□□□ 1.32
SMC4-221ENST00000489573 ASS1P00966 412 aaKnown RBP23.3■■□□□ 1.32
SMC4-221ENST00000489573 CST3P01034 146 aaPredicted RBP23.3■■□□□ 1.32
SMC4-221ENST00000489573 CCDC172P0C7W6 258 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 AKAP5P24588 427 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 MYL6P60660 151 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 BFSP2Q13515 415 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 SPOPLQ6IQ16 392 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 C1orf127Q8N9H9 656 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 SHC3Q92529 594 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 PARP2Q9UGN5 583 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 PCDHB2Q9Y5E7 798 aa23.3■■□□□ 1.32
SMC4-221ENST00000489573 EIF3CLB5ME19 914 aaKnown RBP23.29■■□□□ 1.32
SMC4-221ENST00000489573 FOXN3O00409 490 aaPredicted RBP23.29■■□□□ 1.32
SMC4-221ENST00000489573 EVI5O60447 810 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 CLSTN1O94985 981 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 KIF11P52732 1056 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 SGSM1Q2NKQ1 1148 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 SCARA3Q6AZY7 606 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 ALKAL1Q6UXT8 129 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 HACE1Q8IYU2 909 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 ACRBPQ8NEB7 543 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 PPP1R13BQ96KQ4 1090 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 EIF3CQ99613 913 aaKnown RBP23.29■■□□□ 1.32
SMC4-221ENST00000489573 HAUS4Q9H6D7 363 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 RRAGDQ9NQL2 400 aaPredicted RBP23.29■■□□□ 1.32
SMC4-221ENST00000489573 SIX4Q9UIU6 781 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 CITO14578 2027 aa23.29■■□□□ 1.32
SMC4-221ENST00000489573 AKR1B10O60218 316 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 IPO7O95373 1038 aaKnown RBP23.28■■□□□ 1.32
SMC4-221ENST00000489573 SELPP16109 830 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 TBXAS1P24557 533 aaPredicted RBP23.28■■□□□ 1.32
SMC4-221ENST00000489573 DSC3Q14574 896 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 ASTE1Q2TB18 679 aaPredicted RBP23.28■■□□□ 1.32
SMC4-221ENST00000489573 SLC39A5Q6ZMH5 540 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 LRRC8DQ7L1W4 858 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 TAF4BQ92750 862 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 TSPAN18Q96SJ8 248 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 RNF39Q9H2S5 420 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 ITGA11Q9UKX5 1188 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 NUB1Q9Y5A7 615 aa23.28■■□□□ 1.32
SMC4-221ENST00000489573 PQBP1O60828 265 aaKnown RBP23.27■■□□□ 1.32
SMC4-221ENST00000489573 ITGB3P05106 788 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 KRT19P08727 400 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 GJA8P48165 433 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 RAB27AP51159 221 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 CUL2Q13617 745 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ZNF699Q32M78 642 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 XKR4Q5GH76 650 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ABHD8Q96I13 439 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 TRAIPQ9BWF2 469 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 CXCL16Q9H2A7 254 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 DPP3Q9NY33 737 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 MGEA5O60502 916 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ANXA13P27216 316 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ATN1P54259 1190 aaPredicted RBP23.27■■□□□ 1.32
SMC4-221ENST00000489573 KRT83P78385 493 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 PTK2Q05397 1052 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 MBTPS1Q14703 1052 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 FAM71AQ8IYT1 594 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ANKLE1Q8NAG6 615 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 CXorf38Q8TB03 319 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 JAKMIP2Q96AA8 810 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 ZMAT2Q96NC0 199 aaKnown RBP23.27■■□□□ 1.32
SMC4-221ENST00000489573 XYLT2Q9H1B5 865 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 KLK14Q9P0G3 267 aa23.27■■□□□ 1.32
SMC4-221ENST00000489573 REXO2Q9Y3B8 237 aaKnown RBP23.27■■□□□ 1.32
SMC4-221ENST00000489573 UMODL1Q5DID0 1318 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 GOLGA6L9A6NEM1 432 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 LCA5LO95447 670 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 COL6A1P12109 1028 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 ITGA4P13612 1032 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 KCNE1P15382 129 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 USP8P40818 1118 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 SPA17Q15506 151 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 ZBTB6Q15916 424 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 ANKRD33Q7Z3H0 272 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 ZNF571Q7Z3V5 609 aaPredicted RBP23.26■■□□□ 1.31
SMC4-221ENST00000489573 REXO1L1PQ8IX06 675 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 BEST2Q8NFU1 509 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 ARID3AQ99856 593 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms