RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DDX27Q96GQ7 796 aaKnown RBP19.14■□□□□ 0.65
VIM-206ENST00000487938 SNF8Q96H20 258 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 IFT74Q96LB3 600 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 SENP7Q9BQF6 1050 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 DCLK3Q9C098 648 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 RASSF9O75901 435 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PSAPP07602 524 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 ITIH2P19823 946 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 GJC1P36383 396 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PLCB4Q15147 1175 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 CNGA2Q16280 664 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 TDRD10Q5VZ19 366 aaKnown RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 SNRNP48Q6IEG0 339 aaKnown RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 RHBDF2Q6PJF5 856 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 SLCO2A1Q92959 643 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 TMEM143Q96AN5 459 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 ZBTB45Q96K62 511 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 C11orf70Q9BRQ4 267 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 HAUS2Q9NVX0 235 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 CTNNAL1Q9UBT7 734 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 FZD1Q9UP38 647 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PTPRJQ12913 1337 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 EXTL3O43909 919 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 RALAP11233 206 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 ADCY8P40145 1251 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PIK3CAP42336 1068 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PIGWQ7Z7B1 504 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 PRUNE1Q86TP1 453 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 MCPH1Q8NEM0 835 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 ROPN1BQ9BZX4 212 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 STMN4Q9H169 189 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 ROPN1Q9HAT0 212 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 ATP6V0A4Q9HBG4 840 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 JPH1Q9HDC5 661 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 AVENQ9NQS1 362 aaPredicted RBP19.13■□□□□ 0.65
VIM-206ENST00000487938 USTQ9Y2C2 406 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 DOCK5Q9H7D0 1870 aa19.13■□□□□ 0.65
VIM-206ENST00000487938 ZC3H11AO75152 810 aaKnown RBP eCLIP19.12■□□□□ 0.65
VIM-206ENST00000487938 GJB6O95452 261 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 C4BPAP04003 597 aaKnown RBP19.12■□□□□ 0.65
VIM-206ENST00000487938 SSR1P43307 286 aaKnown RBP19.12■□□□□ 0.65
VIM-206ENST00000487938 ACTR2P61160 394 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 CIAPIN1Q6FI81 312 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 TAOK1Q7L7X3 1001 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 HAPLN2Q9GZV7 340 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 MLXIPLQ9NP71 852 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 ARHGAP28Q9P2N2 729 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 SLC9A2Q9UBY0 812 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.12■□□□□ 0.65
VIM-206ENST00000487938 FER1L6Q2WGJ9 1857 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 CCT8L1PA6NM43 557 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 ASAP2O43150 1006 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 DSG3P32926 999 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 TAS2R40P59535 323 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 PTK6Q13882 451 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 ZACNQ401N2 412 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 LACTB2Q53H82 288 aaPredicted RBP19.12■□□□□ 0.65
VIM-206ENST00000487938 SCARA3Q6AZY7 606 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 ARHGEF2Q92974 986 aaKnown RBP19.12■□□□□ 0.65
VIM-206ENST00000487938 SCLT1Q96NL6 688 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 KDM4CQ9H3R0 1056 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 ANAPC5Q9UJX4 755 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 PCDHB4Q9Y5E5 795 aa19.12■□□□□ 0.65
VIM-206ENST00000487938 WDR81Q562E7 1941 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ZNF541Q9H0D2 1346 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 VNN1O95497 513 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 CYP1A1P04798 512 aaPredicted RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 SLC1A1P43005 524 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ZBTB41Q5SVQ8 909 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 NBPF12Q5TAG4 269 aaPredicted RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 MFSD5Q6N075 450 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 TMEM270Q6UE05 265 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 MON1BQ7L1V2 547 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 TAX1BP1Q86VP1 789 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ANKS4BQ8N8V4 417 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ATL2Q8NHH9 583 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ZKSCAN4Q969J2 545 aaPredicted RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 APOBEC3GQ9HC16 384 aaKnown RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 CD248Q9HCU0 757 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 AGO2Q9UKV8 859 aaKnown RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 KIAA1217Q5T5P2 1943 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 MAFGO15525 162 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 PROSCO94903 275 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 MYBL1P10243 752 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ATF2P15336 505 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 CENPCQ03188 943 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 PSMD6Q15008 389 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 SEZ6Q53EL9 994 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ABHD15Q6UXT9 468 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ANKS1BQ7Z6G8 1248 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ZNF677Q86XU0 584 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 NSUN6Q8TEA1 469 aaKnown RBP19.11■□□□□ 0.65
VIM-206ENST00000487938 DYDC1Q8WWB3 177 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 MAIP1Q8WWC4 291 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 FAM81BQ96LP2 452 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 KCNK9Q9NPC2 374 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 ADAM22Q9P0K1 906 aa19.11■□□□□ 0.65
VIM-206ENST00000487938 TTC4O95801 387 aa19.1■□□□□ 0.65
VIM-206ENST00000487938 GAS8O95995 478 aa19.1■□□□□ 0.65
VIM-206ENST00000487938 CD58P19256 250 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms