RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NT5DC1Q5TFE4 455 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 VITQ6UXI7 678 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 CATSPER3Q86XQ3 398 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 ZBTB8OSQ8IWT0 167 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 MCPH1Q8NEM0 835 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 ZNF461Q8TAF7 563 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 SECISBP2LQ93073 1101 aaKnown RBP16.92■□□□□ 0.3
MCF2L-228ENST00000487354 ZSWIM3Q96MP5 696 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 CCDC43Q96MW1 224 aaKnown RBP16.92■□□□□ 0.3
MCF2L-228ENST00000487354 ASB16Q96NS5 453 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 PDRG1Q9NUG6 133 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 GMEB2Q9UKD1 530 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 MRPS17Q9Y2R5 130 aaKnown RBP16.92■□□□□ 0.3
MCF2L-228ENST00000487354 EML5Q05BV3 1969 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 SPAG17Q6Q759 2223 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 SLC30A4O14863 429 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 MEFVO15553 781 aaPredicted RBP16.91■□□□□ 0.3
MCF2L-228ENST00000487354 EPB41L2O43491 1005 aaKnown RBP16.91■□□□□ 0.3
MCF2L-228ENST00000487354 NEMFO60524 1076 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 DMWDQ09019 674 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 MAPK6Q16659 721 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 XKR4Q5GH76 650 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 LAIR1Q6GTX8 287 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 ANKS3Q6ZW76 656 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 CEP120Q8N960 986 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 C2orf40Q9H1Z8 148 aa16.91■□□□□ 0.3
MCF2L-228ENST00000487354 ZNF334Q9HCZ1 680 aaPredicted RBP16.91■□□□□ 0.3
MCF2L-228ENST00000487354 ORC3Q9UBD5 711 aaPredicted RBP16.91■□□□□ 0.3
MCF2L-228ENST00000487354 FRYQ5TBA9 3013 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 SMIM28A0A1B0GU29 152 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 MICAL2O94851 1124 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 CHRNB1P11230 501 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 PTPN2P17706 415 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 XBP1P17861 261 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 ATP2B1P20020 1258 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 NAMPTP43490 491 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 SATB1Q01826 763 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 MRPL58Q14197 206 aaKnown RBP16.9■□□□□ 0.3
MCF2L-228ENST00000487354 DCAF4L1Q3SXM0 396 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 ALKAL1Q6UXT8 129 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 TCEAL8Q8IYN2 117 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 RSPRY1Q96DX4 576 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 UROC1Q96N76 676 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 ZMAT2Q96NC0 199 aaKnown RBP16.9■□□□□ 0.3
MCF2L-228ENST00000487354 CORO1BQ9BR76 489 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 IER2Q9BTL4 223 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 BRD9Q9H8M2 597 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 TUFT1Q9NNX1 390 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 TRPV5Q9NQA5 729 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 INSL5Q9Y5Q6 135 aa16.9■□□□□ 0.3
MCF2L-228ENST00000487354 TSC2P49815 1807 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 ANK1P16157 1881 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 BTBD18B2RXH4 712 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 MAN2B1O00754 1011 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 ATF2P15336 505 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 LIG1P18858 919 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 CYP11B2P19099 503 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 HOXC13P31276 330 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 ST3GAL2Q16842 350 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 PPM1JQ5JR12 505 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 PADI6Q6TGC4 694 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 HS6ST3Q8IZP7 471 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 NETO1Q8TDF5 533 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 ADPGKQ9BRR6 497 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 TRMT61BQ9BVS5 477 aaKnown RBP16.89■□□□□ 0.29
MCF2L-228ENST00000487354 LMAN1LQ9HAT1 526 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 ZFP14Q9HCL3 533 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 POLD4Q9HCU8 107 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 C2orf42Q9NWW7 574 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 CEP72Q9P209 647 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 PIAS3Q9Y6X2 628 aa16.89■□□□□ 0.29
MCF2L-228ENST00000487354 K7ESF4 209 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 HRO43593 1189 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 LARGE1O95461 756 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 LRG1P02750 347 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 RETP07949 1114 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 GDI1P31150 447 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 VIPR2P41587 438 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 CCR3P51677 355 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 EPHA5P54756 1037 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 SRSF5Q13243 272 aaKnown RBP16.88■□□□□ 0.29
MCF2L-228ENST00000487354 ATF7IP2Q5U623 682 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 CELF5Q8N6W0 485 aaKnown RBP16.88■□□□□ 0.29
MCF2L-228ENST00000487354 FAM3CQ92520 227 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 SMARCD2Q92925 531 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 POLR3CQ9BUI4 534 aaPredicted RBP16.88■□□□□ 0.29
MCF2L-228ENST00000487354 TRPV4Q9HBA0 871 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 PTPRHQ9HD43 1115 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 SEMA4GQ9NTN9 838 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 FBXL5Q9UKA1 691 aa16.88■□□□□ 0.29
MCF2L-228ENST00000487354 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.87■□□□□ 0.29
MCF2L-228ENST00000487354 PODXLO00592 558 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 ABLIM1O14639 778 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 GDF9O60383 454 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 LRP3O75074 770 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 VNN2O95498 520 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 GJA1P17302 382 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 PSMC3P17980 439 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 NRLP54845 237 aa16.87■□□□□ 0.29
MCF2L-228ENST00000487354 ECM1Q16610 540 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms