RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MYL5Q02045 173 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 DSG1Q02413 1049 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 ELAVL2Q12926 359 aaKnown RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 PAK1Q13153 545 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 LLGL2Q6P1M3 1020 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 CYP26C1Q6V0L0 522 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 SFR1Q86XK3 245 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 SMYD4Q8IYR2 804 aaPredicted RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 AOPEPQ8N6M6 819 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 ENOX1Q8TC92 643 aaKnown RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 HDAC7Q8WUI4 952 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 DHTKD1Q96HY7 919 aaPredicted RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 RIPOR3Q96MK2 946 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 KLHL5Q96PQ7 755 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 ACO2Q99798 780 aaKnown RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 KIFC3Q9BVG8 833 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 RHOBTB2Q9BYZ6 727 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 ZHX3Q9H4I2 956 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 RXFP1Q9HBX9 757 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 PTPRHQ9HD43 1115 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 SLC39A2Q9NP94 309 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 SNTG2Q9NY99 539 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 ADAM28Q9UKQ2 775 aa18.54■□□□□ 0.56
VIM-205ENST00000485947 PRG3Q9Y2Y8 225 aaPredicted RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.54■□□□□ 0.56
VIM-205ENST00000485947 PRR33A8MZF0 331 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 ADH1AP07327 375 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 MCF2P10911 925 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 KLRC2P26717 231 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 GRM5P41594 1212 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 YARSP54577 528 aaKnown RBP18.53■□□□□ 0.56
VIM-205ENST00000485947 RBM10P98175 930 aaKnown RBP18.53■□□□□ 0.56
VIM-205ENST00000485947 STRN3Q13033 797 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 HSP90AA2PQ14568 343 aaPredicted RBP18.53■□□□□ 0.56
VIM-205ENST00000485947 USP41Q3LFD5 358 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 KIAA0319Q5VV43 1072 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 KIAA1841Q6NSI8 718 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 ZPBP2Q6X784 338 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 STXBP4Q6ZWJ1 553 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 LUZP1Q86V48 1076 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 DHX40Q8IX18 779 aaKnown RBP18.53■□□□□ 0.56
VIM-205ENST00000485947 MYCT1Q8N699 235 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 UROC1Q96N76 676 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 CCDC94Q9BW85 323 aaPredicted RBP18.53■□□□□ 0.56
VIM-205ENST00000485947 FNIP2Q9P278 1114 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 RWDD2AQ9UIY3 292 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 NR2E1Q9Y466 385 aa18.53■□□□□ 0.56
VIM-205ENST00000485947 SF3B1O75533 1304 aaKnown RBP eCLIP18.52■□□□□ 0.564e-7■■■■■ 40.1
VIM-205ENST00000485947 UBE4BO95155 1302 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 BICDL2A1A5D9 508 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 PTGESO14684 152 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 EIF3DO15371 548 aaKnown RBP eCLIP18.52■□□□□ 0.56
VIM-205ENST00000485947 TADA2AO75478 443 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 CNPP09543 421 aaKnown RBP18.52■□□□□ 0.56
VIM-205ENST00000485947 PROZP22891 400 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 CLCN4P51793 760 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 ALCAMQ13740 583 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 XKR4Q5GH76 650 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 ATAT1Q5SQI0 421 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 EEF1DP3Q658K8 133 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 FUT10Q6P4F1 479 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 PDXDC1Q6P996 788 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 FOXR2Q6PJQ5 311 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 TMEM161BQ8NDZ6 487 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 SFXN1Q9H9B4 322 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 KLK14Q9P0G3 267 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 CTNND2Q9UQB3 1225 aa18.52■□□□□ 0.56
VIM-205ENST00000485947 TMEM189-UBE2V1I3L0A0 370 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 TOM1L1O75674 476 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 CCNE1P24864 410 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 KYAT1Q16773 422 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 ZNF568Q3ZCX4 644 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 KLHL10Q6JEL2 608 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 MPZL3Q6UWV2 235 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 C15orf39Q6ZRI6 1047 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 TAS1R3Q7RTX0 852 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 RNF135Q8IUD6 432 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 CMASQ8NFW8 434 aaPredicted RBP18.51■□□□□ 0.55
VIM-205ENST00000485947 NELFBQ8WX92 580 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 AUTS2Q8WXX7 1259 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 FBXL18Q96ME1 805 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 MRPL44Q9H9J2 332 aaKnown RBP18.51■□□□□ 0.55
VIM-205ENST00000485947 POLD4Q9HCU8 107 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 SLC38A7Q9NVC3 462 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 USTQ9Y2C2 406 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 ZNF318Q5VUA4 2279 aa18.51■□□□□ 0.55
VIM-205ENST00000485947 SLC16A4O15374 487 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 PAPLNO95428 1278 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 EDN1P05305 212 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 NCAPHQ15003 741 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 NAB2Q15742 525 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 BMT2Q1RMZ1 405 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 SPATA1Q5VX52 437 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 ALKAL1Q6UXT8 129 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 EPM2AIP1Q7L775 607 aaPredicted RBP18.5■□□□□ 0.55
VIM-205ENST00000485947 HPS3Q969F9 1004 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 DDX27Q96GQ7 796 aaKnown RBP18.5■□□□□ 0.55
VIM-205ENST00000485947 PPP1R10Q96QC0 940 aaKnown RBP18.5■□□□□ 0.55
VIM-205ENST00000485947 FIZ1Q96SL8 496 aa18.5■□□□□ 0.55
VIM-205ENST00000485947 TCHPQ9BT92 498 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms