RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SPSB2Q99619 263 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 TSG101Q99816 390 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 GTPBP4Q9BZE4 634 aaKnown RBP8.74□□□□□ -1.01
USP40-216ENST00000485943 SLC39A2Q9NP94 309 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 PRDM9Q9NQV7 894 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 OLFML3Q9NRN5 406 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 KBTBD4Q9NVX7 518 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 LZTS1Q9Y250 596 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 KIAA1671Q9BY89 1806 aa8.74□□□□□ -1.01
USP40-216ENST00000485943 ZMYM2Q9UBW7 1377 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 EPOPA6NHQ4 379 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 MEIS3P2A8K0S8 358 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 NRP1O14786 923 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 EIF3DO15371 548 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP40-216ENST00000485943 EXOC3O60645 756 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ARHGEF15O94989 841 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 RPN1P04843 607 aaKnown RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 ADH1AP07327 375 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 GALTP07902 379 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 KRT19P08727 400 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 CXCL8P10145 99 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 MYBP10242 640 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ATF7P17544 494 aaPredicted RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 TRIM21P19474 475 aaKnown RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 KCNA5P22460 613 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 NRIP1P48552 1158 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 SLC11A1P49279 550 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 GLUD2P49448 558 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 GTF2BQ00403 316 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 PLCB3Q01970 1234 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 FAM160A1Q05DH4 1040 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 MCL1Q07820 350 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 TMEM132DQ14C87 1099 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 SURF1Q15526 300 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 USP41Q3LFD5 358 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 SEZ6Q53EL9 994 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 TCEAL5Q5H9L2 206 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 AXDND1Q5T1B0 1012 aaPredicted RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 LLGL2Q6P1M3 1020 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 DSTYKQ6XUX3 929 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 KRBA2Q6ZNG9 492 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 NYAP1Q6ZVC0 841 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 PAGE5Q96GU1 130 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 IGSF21Q96ID5 467 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ANKRD36BP1Q96IX9 119 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ZBTB45Q96K62 511 aaPredicted RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 CDCA3Q99618 268 aaPredicted RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 C7orf25Q9BPX7 421 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 FAM213AQ9BRX8 229 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 PCIF1Q9H4Z3 704 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 CWH43Q9H720 699 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 PLEKHA5Q9HAU0 1116 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 KIAA1586Q9HCI6 787 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 DNAJB4Q9UDY4 337 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ADAM28Q9UKQ2 775 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 UBQLN1Q9UMX0 589 aaKnown RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 FRMD4BQ9Y2L6 1034 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 ZDHHC9Q9Y397 364 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 RANBP2P49792 3224 aaKnown RBP8.73□□□□□ -1.01
USP40-216ENST00000485943 UBE4BO95155 1302 aa8.73□□□□□ -1.01
USP40-216ENST00000485943 COL4A6Q14031 1691 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 TRIP11Q15643 1979 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 A0A087X0B3 334 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ZNF233A6NK53 670 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 PODXLO00592 558 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 PHACTR2O75167 634 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 IL18RAPO95256 599 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 TNNC2P02585 160 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 RPL13P26373 211 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 ELF1P32519 619 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ACOT2P49753 483 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 CYP2J2P51589 502 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 UBE2HP62256 183 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 MRPS5P82675 430 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 TFAMQ00059 246 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 CUL4BQ13620 913 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ADGRE1Q14246 886 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 CES5AQ6NT32 575 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 FUT10Q6P4F1 479 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 SPRED2Q7Z698 418 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 DDX53Q86TM3 631 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 METTL23Q86XA0 190 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ZNF280BQ86YH2 543 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 GLYCTKQ8IVS8 523 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP40-216ENST00000485943 GRAMD1CQ8IYS0 662 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 SLC39A11Q8N1S5 342 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 GPD1LQ8N335 351 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 CCDC150Q8NCX0 1101 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 SPPL3Q8TCT6 385 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 CASP10Q92851 521 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ZNF560Q96MR9 790 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 UCN2Q96RP3 112 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 ST6GALNAC4Q9H4F1 302 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 RC3H2Q9HBD1 1191 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP40-216ENST00000485943 RNF19AQ9NV58 838 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 RBAKQ9NYW8 714 aaPredicted RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 CGNQ9P2M7 1197 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 HCSTQ9UBK5 93 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms