RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	HOXB1	P14653	301 aa	Predicted RBP	11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	TGM1	P22735	817 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	IGFBP6	P24592	240 aa	Predicted RBP	11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	TRAPPC10	P48553	1259 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZRSR1	Q15695	479 aa	Known RBP	11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	MLF2	Q15773	248 aa	Predicted RBP	11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	LPAL2	Q16609	132 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	RTP2	Q5QGT7	225 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	MCTP1	Q6DN14	999 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZBTB44	Q8NCP5	570 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	IFT74	Q96LB3	600 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	ADPGK	Q9BRR6	497 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	PRKD2	Q9BZL6	878 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	CCDC113	Q9H0I3	377 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZSCAN32	Q9NX65	697 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	GREB1	Q4ZG55	1949 aa		11.64	□□□□□ -0.55
HMGN1-215	ENST00000485550	CCDC169	A6NNP5	214 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	LILRB5	O75023	590 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	KIF4A	O95239	1232 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	CENPB	P07199	599 aa	Predicted RBP	11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	FSHR	P23945	695 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	U2AF2	P26368	475 aa	Known RBP eCLIP	11.63	□□□□□ -0.55	8e-8	■■■■■ 35
HMGN1-215	ENST00000485550	PEX3	P56589	373 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	NTHL1	P78549	312 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	TUSC3	Q13454	348 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	PDIA5	Q14554	519 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	PPP2R5A	Q15172	486 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	IL17A	Q16552	155 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	SLC44A4	Q53GD3	710 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	PPM1J	Q5JR12	505 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	GLRA4	Q5JXX5	417 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	NT5DC1	Q5TFE4	455 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	FAM171A1	Q5VUB5	890 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	GRASP	Q7Z6J2	395 aa	Predicted RBP	11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	DDX23	Q9BUQ8	820 aa	Known RBP	11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	EPC1	Q9H2F5	836 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	PLEKHA4	Q9H4M7	779 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	LTB4R2	Q9NPC1	389 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	GMEB2	Q9UKD1	530 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	DNM3	Q9UQ16	869 aa		11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	11.63	□□□□□ -0.55
HMGN1-215	ENST00000485550	SFI1	A8K8P3	1242 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550		K7ERI5	159 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	MUT	P22033	750 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	EFNA5	P52803	228 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	OSTN	P61366	133 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	SPEM2	Q0P670	501 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	NAB2	Q15742	525 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	ATF7IP2	Q5U623	682 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	KRT79	Q5XKE5	535 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	LILRA6	Q6PI73	481 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	CEP120	Q8N960	986 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	IGSF22	Q8N9C0	903 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	HDAC7	Q8WUI4	952 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	KIFAP3	Q92845	792 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	BORCS6	Q96GS4	357 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	PLIN2	Q99541	437 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	TTPAL	Q9BTX7	342 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZDHHC7	Q9NXF8	308 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	FNIP2	Q9P278	1114 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	CDH7	Q9ULB5	785 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	ATG2B	Q96BY7	2078 aa		11.62	□□□□□ -0.55
HMGN1-215	ENST00000485550	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	4e-6	■□□□□ 8.6
HMGN1-215	ENST00000485550	HIP1R	O75146	1068 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZMYND10	O75800	440 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	PAPLN	O95428	1278 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	TARS	P26639	723 aa	Known RBP	11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	NPTX2	P47972	431 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	PRKCQ	Q04759	706 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	RAD51AP2	Q09MP3	1159 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	ZBTB41	Q5SVQ8	909 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	DTHD1	Q6ZMT9	781 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	TPRG1	Q6ZUI0	275 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	KCNK18	Q7Z418	384 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	HS6ST3	Q8IZP7	471 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	DAW1	Q8N136	415 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	LNX1	Q8TBB1	728 aa	Predicted RBP	11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	NELL1	Q92832	810 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	KXD1	Q9BQD3	176 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	CLSTN3	Q9BQT9	956 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	RUSC1	Q9BVN2	902 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	OSBPL6	Q9BZF3	934 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	RAB34	Q9BZG1	259 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	GOLGA2P5	Q9HBQ8	144 aa		11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.61	□□□□□ -0.55
HMGN1-215	ENST00000485550	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550		I3L4J1	428 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	ADAM12	O43184	909 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	TBC1D4	O60343	1298 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	B3GAT3	O94766	335 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	CD2BP2	O95400	341 aa	Known RBP	11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	HARS	P12081	509 aa	Known RBP	11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	CLCNKB	P51801	687 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	RABEP1	Q15276	862 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	PSMD5	Q16401	504 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	DCAF4L1	Q3SXM0	396 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	RINT1	Q6NUQ1	792 aa		11.6	□□□□□ -0.55
HMGN1-215	ENST00000485550	MTSS1L	Q765P7	747 aa		11.6	□□□□□ -0.55

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