RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	GJA8	P48165	433 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	GUCY2F	P51841	1108 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	MFAP3	P55082	362 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	KLHL30	Q0D2K2	578 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	MBTPS1	Q14703	1052 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	TMEM132D	Q14C87	1099 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	TDRD12	Q587J7	1177 aa	Known RBP	12.08	□□□□□ -0.48
APTX-223	ENST00000479656	CCAR2	Q8N163	923 aa	Known RBP	12.08	□□□□□ -0.48
APTX-223	ENST00000479656	C1orf127	Q8N9H9	656 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	USP38	Q8NB14	1042 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	CAGE1	Q8TC20	777 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	DIS3L	Q8TF46	1054 aa	Known RBP	12.08	□□□□□ -0.48
APTX-223	ENST00000479656	SNX27	Q96L92	541 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	CCDC42	Q96M95	316 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	HAUS4	Q9H6D7	363 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	C1orf112	Q9NSG2	853 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	FAM105A	Q9NUU6	356 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	NUB1	Q9Y5A7	615 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	SQOR	Q9Y6N5	450 aa		12.08	□□□□□ -0.48
APTX-223	ENST00000479656	ANK1	P16157	1881 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	NDUFA10	O95299	355 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	FER	P16591	822 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	SGSM1	Q2NKQ1	1148 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	GLRA4	Q5JXX5	417 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	LRRC8D	Q7L1W4	858 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	CCDC170	Q8IYT3	715 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	ACRBP	Q8NEB7	543 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	RRAGD	Q9NQL2	400 aa	Predicted RBP	12.07	□□□□□ -0.48
APTX-223	ENST00000479656	SIX4	Q9UIU6	781 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	PPP2R2C	Q9Y2T4	447 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	C2CD2	Q9Y426	696 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	ADGRG1	Q9Y653	693 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	UMODL1	Q5DID0	1318 aa		12.07	□□□□□ -0.48
APTX-223	ENST00000479656	MEIS3P2	A8K0S8	358 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	TLR3	O15455	904 aa	Known RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	EVI5	O60447	810 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ASS1	P00966	412 aa	Known RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ITGB3	P05106	788 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	SELP	P16109	830 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	CYLC1	P35663	651 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	USP8	P40818	1118 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	NOP14	P78316	857 aa	Known RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	GCNT1	Q02742	428 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	BFSP2	Q13515	415 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	DSC3	Q14574	896 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ZBTB6	Q15916	424 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	NT5DC4	Q86YG4	428 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ARID3A	Q99856	593 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ADAM2	Q99965	735 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	IMPG2	Q9BZV3	1241 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	DEF6	Q9H4E7	631 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	SPTLC3	Q9NUV7	552 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	DPP3	Q9NY33	737 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	CNTN3	Q9P232	1028 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	SMIM28	A0A1B0GU29	152 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	SSU72P8	A0A1W2PR75	194 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	COL6A1	P12109	1028 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ITGA4	P13612	1032 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	IBSP	P21815	317 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	PRKCI	P41743	596 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	TLE2	Q04725	743 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	PTK2	Q05397	1052 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	FAAP100	Q0VG06	881 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ASTE1	Q2TB18	679 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	TRIM60	Q495X7	471 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	XKR4	Q5GH76	650 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ANKRD33	Q7Z3H0	272 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	ZNF571	Q7Z3V5	609 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	REXO1L1P	Q8IX06	675 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	CXorf38	Q8TB03	319 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	LPP	Q93052	612 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	C18orf25	Q96B23	403 aa	Predicted RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656	XYLT2	Q9H1B5	865 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	KCND1	Q9NSA2	647 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	AGAP1	Q9UPQ3	857 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	DERA	Q9Y315	318 aa		12.06	□□□□□ -0.48
APTX-223	ENST00000479656	BZW2	Q9Y6E2	419 aa	Known RBP	12.06	□□□□□ -0.48
APTX-223	ENST00000479656		A0A0U1RQJ8	604 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	DCDC2C	A8MYV0	355 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	EIF3CL	B5ME19	914 aa	Known RBP	12.05	□□□□□ -0.48
APTX-223	ENST00000479656	ZSCAN12	O43309	604 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	AKR1B10	O60218	316 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	CCDC175	P0C221	793 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	POLR2B	P30876	1174 aa	Known RBP	12.05	□□□□□ -0.48
APTX-223	ENST00000479656	KIF11	P52732	1056 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	CYP27A1	Q02318	531 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	GFPT1	Q06210	699 aa	Predicted RBP	12.05	□□□□□ -0.48
APTX-223	ENST00000479656	CUL2	Q13617	745 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	GPNMB	Q14956	572 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	ENOSF1	Q7L5Y1	443 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	FAM71A	Q8IYT1	594 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	ATRIP	Q8WXE1	791 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	SHC3	Q92529	594 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	PAWR	Q96IZ0	340 aa	Known RBP	12.05	□□□□□ -0.48
APTX-223	ENST00000479656	PPP1R13B	Q96KQ4	1090 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	FAM81B	Q96LP2	452 aa		12.05	□□□□□ -0.48
APTX-223	ENST00000479656	EIF3C	Q99613	913 aa	Known RBP	12.05	□□□□□ -0.48
APTX-223	ENST00000479656	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms