RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SLURP2P0DP57 97 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 CACNA2D1P54289 1103 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 MAP3K21Q5TCX8 1036 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 MREGQ8N565 214 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 CCT6BQ92526 530 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 CCDC17Q96LX7 622 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 ERVK-5Q9HDB9 667 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 FLT1P17948 1338 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 RASSF9O75901 435 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 KRT37O76014 449 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 POLGP54098 1239 aaPredicted RBP14.29□□□□□ -0.12
USP42-206ENST00000479544 SBK1Q52WX2 424 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 PPP1R18Q6NYC8 613 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 NME8Q8N427 588 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 GALNT4Q8N4A0 578 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 MCUQ8NE86 351 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 KAT5Q92993 513 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 APOBEC2Q9Y235 224 aaKnown RBP14.29□□□□□ -0.12
USP42-206ENST00000479544 ANKRD26Q9UPS8 1709 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 PFASO15067 1338 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 TTC4O95801 387 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 TMEM191BP0C7N4 346 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 NCALDP61601 193 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 ARHGEF16Q5VV41 709 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 HGSNATQ68CP4 663 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 RAPH1Q70E73 1250 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 CYFIP1Q7L576 1253 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 EXOC3L1Q86VI1 746 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 TTC8Q8TAM2 541 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 ALG3Q92685 438 aa14.29□□□□□ -0.12
USP42-206ENST00000479544 EYA4O95677 639 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 CAV1Q03135 178 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 NR1H3Q13133 447 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 DYNC1I2Q13409 638 aaKnown RBP14.28□□□□□ -0.12
USP42-206ENST00000479544 KRT39Q6A163 491 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 VPS11Q9H270 941 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 NWD2Q9ULI1 1742 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 RAD17O75943 681 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 CCDC14Q49A88 953 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 CCNYQ8ND76 341 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 NLRP7Q8WX94 980 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 FAM20AQ96MK3 541 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 PPP1R16BQ96T49 567 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 CHST7Q9NS84 486 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 NARFQ9UHQ1 456 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 IPO5O00410 1097 aaKnown RBP14.28□□□□□ -0.12
USP42-206ENST00000479544 XRCC4Q13426 336 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 GIT2Q14161 759 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 SLC47A2Q86VL8 602 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 VGLL2Q8N8G2 317 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 ATP11CQ8NB49 1132 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 B4GALNT2Q8NHY0 566 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 SLC35C1Q96A29 364 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 CBWD1Q9BRT8 395 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 MMTAG2Q9BU76 263 aaKnown RBP14.28□□□□□ -0.12
USP42-206ENST00000479544 KIAA1683Q9H0B3 1180 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 DCLRE1BQ9H816 532 aa14.28□□□□□ -0.12
USP42-206ENST00000479544 KIAA0391O15091 583 aaKnown RBP14.27□□□□□ -0.12
USP42-206ENST00000479544 TCN1P20061 433 aaPredicted RBP14.27□□□□□ -0.12
USP42-206ENST00000479544 ATP4AP20648 1035 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 STAT2P52630 851 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 C3orf67Q6ZVT6 689 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 SCFD2Q8WU76 684 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 PGM2Q96G03 612 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 TTYH3Q9C0H2 523 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 POLR2BP30876 1174 aaKnown RBP14.27□□□□□ -0.12
USP42-206ENST00000479544 ATG16L1Q676U5 607 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 TEX9Q8N6V9 391 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 FBXL13Q8NEE6 735 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 CXorf38Q8TB03 319 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 SPOCK2Q92563 424 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 TRIM11Q96F44 468 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 NSL1Q96IY1 281 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 FAM81BQ96LP2 452 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 LZTS1Q9Y250 596 aa14.27□□□□□ -0.12
USP42-206ENST00000479544 TISP43B9A030 160 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 RPS6KA4O75676 772 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 ETS2P15036 469 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 CALB2P22676 271 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 FAXCQ5TGI0 409 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 IZUMO2Q6UXV1 221 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 LCA5Q86VQ0 697 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 TBC1D10AQ9BXI6 508 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 AGPAT3Q9NRZ7 376 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 HSPBP1Q9NZL4 362 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 GNA15P30679 374 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 ACOT2P49753 483 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 PRELPP51888 382 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 SF3B3Q15393 1217 aaKnown RBP14.27□□□□□ -0.13
USP42-206ENST00000479544 PKN2Q16513 984 aaKnown RBP14.27□□□□□ -0.13
USP42-206ENST00000479544 NBPF20Q3BBV1 942 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 MAP7D3Q8IWC1 876 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 FHDC1Q9C0D6 1143 aaPredicted RBP14.27□□□□□ -0.13
USP42-206ENST00000479544 C10orf88Q9H8K7 445 aa14.27□□□□□ -0.13
USP42-206ENST00000479544 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP42-206ENST00000479544 GGPS1O95749 300 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 ZBED1O96006 694 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 RRM1P23921 792 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 FNTAP49354 379 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 PPATQ06203 517 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms