RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 ERCC4Q92889 916 aaPredicted RBP12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 BICD1Q96G01 975 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 PPP1R10Q96QC0 940 aaKnown RBP12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 APOL5Q9BWW9 433 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 GPR62Q9BZJ7 368 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 NUCKS1Q9H1E3 243 aaKnown RBP12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 KDM4CQ9H3R0 1056 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 ZHX3Q9H4I2 956 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 ANKFY1Q9P2R3 1169 aa12.56□□□□□ -0.4
HLA-DOB-208ENST00000475235 SMIM28A0A1B0GU29 152 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 TMEM189-UBE2V1I3L0A0 370 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 ABLIM1O14639 778 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 TEX28O15482 410 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 KIF4AO95239 1232 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 GLUD1P00367 558 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 OSTNP61366 133 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 MCL1Q07820 350 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 KYAT1Q16773 422 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 GLRA4Q5JXX5 417 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 TMEM31Q5JXX7 168 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 ATAT1Q5SQI0 421 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 PDXDC1Q6P996 788 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 ALKAL1Q6UXT8 129 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 USP49Q70CQ1 688 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 SV2BQ7L1I2 683 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 LINC00301Q8NCQ3 95 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 RIN2Q8WYP3 895 aaPredicted RBP12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 KHSRPQ92945 711 aaKnown RBP eCLIP12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 DDX27Q96GQ7 796 aaKnown RBP12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 RPGRIP1Q96KN7 1286 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 CALR3Q96L12 384 aaKnown RBP12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 SNX27Q96L92 541 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 CLIC6Q96NY7 704 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 PAAF1Q9BRP4 392 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 FNIP2Q9P278 1114 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 TBX20Q9UMR3 447 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 NR2E1Q9Y466 385 aa12.55□□□□□ -0.4
HLA-DOB-208ENST00000475235 TCF20Q9UGU0 1960 aaKnown RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 HNRNPDLO14979 420 aaKnown RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 SPTLC2O15270 562 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 TRAPPC3O43617 180 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 PPP6R2O75170 966 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 B3GAT3O94766 335 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 YEATS4O95619 227 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 PIGRP01833 764 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 HARSP12081 509 aaKnown RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 KCNE1P15382 129 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 MATR3P43243 847 aaKnown RBP eCLIP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 LIG4P49917 911 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 GTF2A1P52655 376 aaPredicted RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 GABPB1Q06547 395 aaPredicted RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 RARS2Q5T160 578 aaKnown RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 DCLRE1AQ6PJP8 1040 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 GET4Q7L5D6 327 aaPredicted RBP12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 RNF135Q8IUD6 432 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 HASPINQ8TF76 798 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 HDAC7Q8WUI4 952 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 RABGGTAQ92696 567 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 TTPALQ9BTX7 342 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 CXCL16Q9H2A7 254 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 ST6GALNAC4Q9H4F1 302 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 CNTN3Q9P232 1028 aa12.54□□□□□ -0.4
HLA-DOB-208ENST00000475235 GPR37L1O60883 481 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 FAM200BP0CF97 657 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 ZSCAN22P10073 491 aaPredicted RBP12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 STAT6P42226 847 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 CLCNKBP51801 687 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 GTF2BQ00403 316 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 UPP1Q16831 310 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 HERC4Q5GLZ8 1057 aaPredicted RBP12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 FAM171A1Q5VUB5 890 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 CYP26C1Q6V0L0 522 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 C15orf39Q6ZRI6 1047 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 CMASQ8NFW8 434 aaPredicted RBP12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 PIK3R5Q8WYR1 880 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 ZBTB45Q96K62 511 aaPredicted RBP12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 PLEKHA4Q9H4M7 779 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 PLEKHA5Q9HAU0 1116 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 MAN1C1Q9NR34 630 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 CACNG4Q9UBN1 327 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 SEL1LQ9UBV2 794 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 BRWD1Q9NSI6 2320 aa12.53□□□□□ -0.4
HLA-DOB-208ENST00000475235 TPM3P06753 285 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 CLTAP09496 248 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 GAP43P17677 238 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 RPL9P32969 192 aaKnown RBP12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 PSMC1P62191 440 aaKnown RBP12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 RTP2Q5QGT7 225 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 ATL3Q6DD88 541 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 TMC5Q6UXY8 1006 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 GPR149Q86SP6 731 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 CEP57Q86XR8 500 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 MAP4K3Q8IVH8 894 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 C12orf76Q8N812 135 aaPredicted RBP12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 DDX12PQ92771 950 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 HVCN1Q96D96 273 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 B3GALT6Q96L58 329 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 FIZ1Q96SL8 496 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 RHOBTB2Q9BYZ6 727 aa12.52□□□□□ -0.4
HLA-DOB-208ENST00000475235 LRRC27Q9C0I9 530 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms