RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 CACNG4Q9UBN1 327 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 SERTAD1Q9UHV2 236 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 CPSF3Q9UKF6 684 aaKnown RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 AGO2Q9UKV8 859 aaKnown RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 BARX2Q9UMQ3 279 aaPredicted RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 HPSEQ9Y251 543 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 HCFC2Q9Y5Z7 792 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 C2CD2LO14523 706 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 MEFVO15553 781 aaPredicted RBP14.19□□□□□ -0.14
COL28A1-206ENST00000465339 MBTPS2O43462 519 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 XPOTO43592 962 aaKnown RBP14.19□□□□□ -0.14
COL28A1-206ENST00000465339 B3GAT3O94766 335 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 C1RP00736 705 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 MYL1P05976 194 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 CNPP09543 421 aaKnown RBP14.19□□□□□ -0.14
COL28A1-206ENST00000465339 CXCL8P10145 99 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 MYBP10242 640 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 CYP3A5P20815 502 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 KLRC2P26717 231 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 TNFSF9P41273 254 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 AFMP43652 599 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 CASP5P51878 434 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 RBM10P98175 930 aaKnown RBP14.19□□□□□ -0.14
COL28A1-206ENST00000465339 CREMQ03060 361 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 KCNA1Q09470 495 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 ZBTB6Q15916 424 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 FAM171A1Q5VUB5 890 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 LLGL2Q6P1M3 1020 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 PDXDC1Q6P996 788 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 SMRP1Q8NCR6 262 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 SLC22A17Q8WUG5 538 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 POMGNT1Q8WZA1 660 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 FNIP2Q9P278 1114 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 PRKAG3Q9UGI9 489 aa14.19□□□□□ -0.14
COL28A1-206ENST00000465339 MTCL1Q9Y4B5 1905 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 LACTBL1A8MY62 500 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 EIF3DO15371 548 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ACTN4O43707 911 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 LDHAP00338 332 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ADH1AP07327 375 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 IL9P15248 144 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 GARTP22102 1010 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ADSSP30520 456 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 SYKP43405 635 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ACOT2P49753 483 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 SOX4Q06945 474 aaPredicted RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 CUL4BQ13620 913 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 SMAD2Q15796 467 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 CLUL1Q15846 466 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ENOX2Q16206 610 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 FAM26FQ5R3K3 315 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ZNF507Q8TCN5 953 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 HASPINQ8TF76 798 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 RIN2Q8WYP3 895 aaPredicted RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 PAGE5Q96GU1 130 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 TTPALQ9BTX7 342 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 BLZF1Q9H2G9 400 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ASB7Q9H672 318 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 GOLGA2P5Q9HBQ8 144 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 DZANK1Q9NVP4 752 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 DPP7Q9UHL4 492 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 UBQLN1Q9UMX0 589 aaKnown RBP14.18□□□□□ -0.14
COL28A1-206ENST00000465339 ANK1P16157 1881 aa14.18□□□□□ -0.14
COL28A1-206ENST00000465339 TISP43B9A030 160 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 PODXLO00592 558 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 KIAA0391O15091 583 aaKnown RBP14.17□□□□□ -0.14
COL28A1-206ENST00000465339 TEX28O15482 410 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 PRPF6O94906 941 aaKnown RBP14.17□□□□□ -0.14
COL28A1-206ENST00000465339 CLCN4P51793 760 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 NDUFA8P51970 172 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 ITIH3Q06033 890 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 EHHADHQ08426 723 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 ZBTB41Q5SVQ8 909 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 ELMSAN1Q6PJG2 1045 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.17□□□□□ -0.14
COL28A1-206ENST00000465339 CEP57Q86XR8 500 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 FSIP1Q8NA03 581 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 PIK3R5Q8WYR1 880 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 C18orf25Q96B23 403 aaPredicted RBP14.17□□□□□ -0.14
COL28A1-206ENST00000465339 B3GALT6Q96L58 329 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 FGFBP2Q9BYJ0 223 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 S1PR5Q9H228 398 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 IKZF4Q9H2S9 585 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 DERAQ9Y315 318 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 VWA8A3KMH1 1905 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 XIRP2A4UGR9 3374 aa14.17□□□□□ -0.14
COL28A1-206ENST00000465339 GOLGA6L4A6NEF3 574 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 TNFRSF10AO00220 468 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 EPCAMP16422 314 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 FGFR3P22607 806 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 PAX3P23760 479 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 CASP1P29466 404 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 LRPAP1P30533 357 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 SPAG1Q07617 926 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 PSMD2Q13200 908 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 RTP2Q5QGT7 225 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 CES5AQ6NT32 575 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 SYCE2Q6PIF2 218 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 CD300LGQ6UXG3 332 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms