RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 CDH22Q9UJ99 828 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 NUB1Q9Y5A7 615 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 STYXL1Q9Y6J8 313 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 CITO14578 2027 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 ANKRD63C9JTQ0 380 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 CYP3A5P20815 502 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 IGFBP6P24592 240 aaPredicted RBP25.03■■□□□ 1.6
PTPN4-208ENST00000460289 POSTNQ15063 836 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 TMEM31Q5JXX7 168 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 DHX58Q96C10 678 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 KIF12Q96FN5 646 aa25.03■■□□□ 1.6
PTPN4-208ENST00000460289 CPSF3Q9UKF6 684 aaKnown RBP25.03■■□□□ 1.6
PTPN4-208ENST00000460289 UBQLN1Q9UMX0 589 aaKnown RBP25.03■■□□□ 1.6
PTPN4-208ENST00000460289 CCDC195A0A1B0GUA6 201 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 LACTBL1A8MY62 500 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 GPR37L1O60883 481 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 GCNT3O95395 438 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 ADRB2P07550 413 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 SPATA31D3P0C874 917 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 BRCC3P46736 316 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 ENOX2Q16206 610 aaKnown RBP25.02■■□□□ 1.6
PTPN4-208ENST00000460289 L1TD1Q5T7N2 865 aaKnown RBP25.02■■□□□ 1.6
PTPN4-208ENST00000460289 SPATA31D4Q6ZUB0 917 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 ANKS3Q6ZW76 656 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 KREMEN2Q8NCW0 462 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 STAMQ92783 540 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 PYM1Q9BRP8 204 aaKnown RBP25.02■■□□□ 1.6
PTPN4-208ENST00000460289 RHOBTB2Q9BYZ6 727 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 MAGEF1Q9HAY2 307 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 TSHZ2Q9NRE2 1034 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 MUTYHQ9UIF7 546 aa25.02■■□□□ 1.6
PTPN4-208ENST00000460289 AGO2Q9UKV8 859 aaKnown RBP25.02■■□□□ 1.6
PTPN4-208ENST00000460289 POU5F1Q01860 360 aaKnown RBP25.01■■□□□ 1.59
PTPN4-208ENST00000460289 BECN1Q14457 450 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 ZBTB6Q15916 424 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 ZBTB41Q5SVQ8 909 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 ZDHHC7Q9NXF8 308 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 TUBGCP4Q9UGJ1 667 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 USTQ9Y2C2 406 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 ATP6V1DQ9Y5K8 247 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 BACE2Q9Y5Z0 518 aa25.01■■□□□ 1.59
PTPN4-208ENST00000460289 I3L4J1 428 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 SYN3O14994 580 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 POLR2DO15514 142 aaKnown RBP25■■□□□ 1.59
PTPN4-208ENST00000460289 TKTP29401 623 aaKnown RBP25■■□□□ 1.59
PTPN4-208ENST00000460289 LRPAP1P30533 357 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 SPAG1Q07617 926 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 RESP18Q5W5W9 173 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 STXBP4Q6ZWJ1 553 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 POMGNT1Q8WZA1 660 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 FAM212AQ96EL1 285 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 TRIM9Q9C026 710 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 ASB7Q9H672 318 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 TMEM206Q9H813 350 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 MTRRQ9UBK8 725 aa25■■□□□ 1.59
PTPN4-208ENST00000460289 MYBP10242 640 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 SP100P23497 879 aaPredicted RBP24.99■■□□□ 1.59
PTPN4-208ENST00000460289 MCM4P33991 863 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 OR1D2P34982 312 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 ACOT2P49753 483 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 KRT85P78386 507 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 KCNA1Q09470 495 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 RAB33AQ14088 237 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 CNNM4Q6P4Q7 775 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 SYCP3Q8IZU3 236 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 PLCD3Q8N3E9 789 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 DERAQ9Y315 318 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 ZDHHC9Q9Y397 364 aa24.99■■□□□ 1.59
PTPN4-208ENST00000460289 TISP43B9A030 160 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 RFPL2O75678 378 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 PAPLNO95428 1278 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 ADSSP30520 456 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 LIN9Q5TKA1 542 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 CCDC149Q6ZUS6 474 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 BEST2Q8NFU1 509 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 ACSF2Q96CM8 615 aaPredicted RBP24.98■■□□□ 1.59
PTPN4-208ENST00000460289 SUSD3Q96L08 255 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 C7orf25Q9BPX7 421 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 LRFN3Q9BTN0 628 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 FBXW11Q9UKB1 542 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 CDY1Q9Y6F8 540 aa24.98■■□□□ 1.59
PTPN4-208ENST00000460289 C2CD4DB7Z1M9 353 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 H7C4K7 107 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 ZMYND10O75800 440 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 CASP5P51878 434 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 ASIC1P78348 528 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 VARS2Q5ST30 1063 aaKnown RBP24.97■■□□□ 1.59
PTPN4-208ENST00000460289 SPATA1Q5VX52 437 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 OTOP3Q7RTS5 596 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 TDRD5Q8NAT2 981 aaKnown RBP24.97■■□□□ 1.59
PTPN4-208ENST00000460289 APPL2Q8NEU8 664 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 SMG7Q92540 1137 aaKnown RBP24.97■■□□□ 1.59
PTPN4-208ENST00000460289 EDAQ92838 391 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 SPATA32Q96LK8 384 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 PRKD2Q9BZL6 878 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 PIDD1Q9HB75 910 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 C11orf16Q9NQ32 467 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 KCNH3Q9ULD8 1083 aa24.97■■□□□ 1.59
PTPN4-208ENST00000460289 ADAM12O43184 909 aa24.96■■□□□ 1.59
PTPN4-208ENST00000460289 LDHAP00338 332 aaKnown RBP24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms