RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 POLIQ9UNA4 740 aa24.88■■□□□ 1.57
PTPN4-207ENST00000460162 NUB1Q9Y5A7 615 aa24.88■■□□□ 1.57
PTPN4-207ENST00000460162 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.88■■□□□ 1.57
PTPN4-207ENST00000460162 NPHP3-ACAD11A0A0J9YXS1 232 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 CFHP08603 1231 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 ROR1Q01973 937 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 VARS2Q5ST30 1063 aaKnown RBP24.87■■□□□ 1.57
PTPN4-207ENST00000460162 GPBP1Q86WP2 473 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 BICD1Q96G01 975 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 RTP3Q9BQQ7 232 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 FAM86C1Q9NVL1 165 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 NUMBLQ9Y6R0 609 aa24.87■■□□□ 1.57
PTPN4-207ENST00000460162 NOTCH4Q99466 2003 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 H0Y858 1186 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 ZNF131P52739 623 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 NTHL1P78549 312 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 SLC10A6Q3KNW5 377 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 HAUS6Q7Z4H7 955 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 C18orf25Q96B23 403 aaPredicted RBP24.86■■□□□ 1.57
PTPN4-207ENST00000460162 PLEKHA5Q9HAU0 1116 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 BLOC1S4Q9NUP1 217 aa24.86■■□□□ 1.57
PTPN4-207ENST00000460162 USP34Q70CQ2 3546 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 H7C4K7 107 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 CXCL8P10145 99 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 PLCG1P19174 1290 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 MATR3P43243 847 aaKnown RBP eCLIP24.85■■□□□ 1.57
PTPN4-207ENST00000460162 CUL4AQ13619 759 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 SF3A1Q15459 793 aaKnown RBP24.85■■□□□ 1.57
PTPN4-207ENST00000460162 SEZ6Q53EL9 994 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 MTSS1LQ765P7 747 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 RASSF8Q8NHQ8 419 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 ZNF461Q8TAF7 563 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 LRRC15Q8TF66 581 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 FGF13Q92913 245 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 SUSD3Q96L08 255 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 PARVGQ9HBI0 331 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 SLC2A4RGQ9NR83 387 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 KCNH3Q9ULD8 1083 aa24.85■■□□□ 1.57
PTPN4-207ENST00000460162 VPS37CA5D8V6 355 aaPredicted RBP24.84■■□□□ 1.57
PTPN4-207ENST00000460162 K7ENM7 598 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 HNRNPDLO14979 420 aaKnown RBP24.84■■□□□ 1.57
PTPN4-207ENST00000460162 FAM13AO94988 1023 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 PIGRP01833 764 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 CLTAP09496 248 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 PDCP20941 246 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 MCM4P33991 863 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 LIG4P49917 911 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 KYAT1Q16773 422 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 PABPC1LQ4VXU2 614 aaKnown RBP24.84■■□□□ 1.57
PTPN4-207ENST00000460162 CCDC105Q8IYK2 499 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 RAD54LQ92698 747 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 HAPLN2Q9GZV7 340 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 TUBGCP4Q9UGJ1 667 aa24.84■■□□□ 1.57
PTPN4-207ENST00000460162 WDR27A2RRH5 827 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 KRBA1A5PL33 1030 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 TBC1D4O60343 1298 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 ABLIM3O94929 683 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 ABCD1P33897 745 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 GRIN1Q05586 938 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 PPP2R3AQ06190 1150 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 MRPL58Q14197 206 aaKnown RBP24.83■■□□□ 1.57
PTPN4-207ENST00000460162 KARSQ15046 597 aaKnown RBP24.83■■□□□ 1.57
PTPN4-207ENST00000460162 ZNF280DQ6N043 979 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 GPR152Q8TDT2 470 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 FGF14Q92915 247 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 DNMT3BQ9UBC3 853 aaKnown RBP24.83■■□□□ 1.57
PTPN4-207ENST00000460162 TBX20Q9UMR3 447 aa24.83■■□□□ 1.57
PTPN4-207ENST00000460162 TTC26A0AVF1 554 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 ARHGEF37A1IGU5 675 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 TBCAO75347 108 aaKnown RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 KRT18P05783 430 aaKnown RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 ATF2P15336 505 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 RFX1P22670 979 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 DHX8Q14562 1220 aaKnown RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 NPAS3Q8IXF0 933 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 MYCT1Q8N699 235 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 APPL2Q8NEU8 664 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 ITFG1Q8TB96 612 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 LARP4BQ92615 738 aaKnown RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 AVENQ9NQS1 362 aaPredicted RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 ARHGEF3Q9NR81 526 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 HCFC1R1Q9NWW0 138 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 FBXL5Q9UKA1 691 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 CA14Q9ULX7 337 aa24.82■■□□□ 1.56
PTPN4-207ENST00000460162 UBQLN1Q9UMX0 589 aaKnown RBP24.82■■□□□ 1.56
PTPN4-207ENST00000460162 PROB1E7EW31 1015 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 PI15O43692 258 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 TRAK2O60296 914 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 LRG1P02750 347 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 LRPAP1P30533 357 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 ELF1P32519 619 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 MCM6Q14566 821 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 CTXN3Q4LDR2 81 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 TPGS2Q68CL5 300 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 PARM1Q6UWI2 310 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 TCEAL8Q8IYN2 117 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 TSPAN18Q96SJ8 248 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 CCSER1Q9C0I3 900 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 TBC1D17Q9HA65 648 aa24.81■■□□□ 1.56
PTPN4-207ENST00000460162 PCDHB8Q9UN66 801 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms