RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZACNQ401N2 412 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 XKR4Q5GH76 650 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 SPOPLQ6IQ16 392 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 POTEHQ6S545 545 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 C7orf61Q8IZ16 206 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CRIPAKQ8N1N5 446 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CPLX3Q8WVH0 158 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 FNBP1Q96RU3 617 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 GAD1Q99259 594 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 LSM14BQ9BX40 385 aaKnown RBP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 TTYH3Q9C0H2 523 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 GANQ9H2C0 597 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 GOLGA2P5Q9HBQ8 144 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 TMEM8AQ9HCN3 771 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 FAM207AQ9NSI2 230 aaPredicted RBP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 TUBGCP4Q9UGJ1 667 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 SIX4Q9UIU6 781 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 COQ4Q9Y3A0 265 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 COL4A6Q14031 1691 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 TNRC18O15417 2968 aaPredicted RBP11.87□□□□□ -0.51
SCN9A-205ENST00000454569 A0A1W2PQC6 194 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 HLA-DRAP01903 254 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 FGFR1P11362 822 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 ITGA4P13612 1032 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 RAG1P15918 1043 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 MLH1P40692 756 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 MXI1P50539 228 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 EPHB4P54760 987 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 PPP2R3AQ06190 1150 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 NAB2Q15742 525 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 FKBP15Q5T1M5 1219 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 SPECC1LQ69YQ0 1117 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 KRT39Q6A163 491 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 PHLDB3Q6NSJ2 640 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 TRIM65Q6PJ69 517 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 TRAPPC11Q7Z392 1133 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 TMCO2Q7Z6W1 182 aaPredicted RBP11.87□□□□□ -0.51
SCN9A-205ENST00000454569 WDR49Q8IV35 697 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 ARHGEF19Q8IW93 802 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 DRC7Q8IY82 874 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 C1orf127Q8N9H9 656 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 EHBP1Q8NDI1 1231 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 SEPT8Q92599 483 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 KAT5Q92993 513 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 TATDN2Q93075 761 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 INTS2Q9H0H0 1204 aaKnown RBP11.87□□□□□ -0.51
SCN9A-205ENST00000454569 ASB7Q9H672 318 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 GCNT4Q9P109 453 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 CNTN3Q9P232 1028 aa11.87□□□□□ -0.51
SCN9A-205ENST00000454569 ARL5CA6NH57 179 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 B4GALT3O60512 393 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 IL18RAPO95256 599 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 TPM2P07951 284 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 CASP14P31944 242 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 GTF2H1P32780 548 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 ADKP55263 362 aaKnown RBP11.86□□□□□ -0.51
SCN9A-205ENST00000454569 MYL6P60660 151 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 ENPEPQ07075 957 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 EXOC3L4Q17RC7 722 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 CLLU1OSQ5K130 101 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 MFSD5Q6N075 450 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 GBP6Q6ZN66 633 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 SLC24A5Q71RS6 500 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 CCDC186Q7Z3E2 898 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.86□□□□□ -0.51
SCN9A-205ENST00000454569 RABGGTAQ92696 567 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 BADQ92934 168 aa11.86□□□□□ -0.51
SCN9A-205ENST00000454569 APOBEC3GQ9HC16 384 aaKnown RBP11.86□□□□□ -0.51
SCN9A-205ENST00000454569 ZMYND8Q9ULU4 1186 aaPredicted RBP11.86□□□□□ -0.51
SCN9A-205ENST00000454569 GTPBP10A4D1E9 387 aaKnown RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PMM2O15305 246 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 OFD1O75665 1012 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PNMA6AP0CW24 399 aaPredicted RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 SCNN1GP51170 649 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 YARSP54577 528 aaKnown RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 POU5F1Q01860 360 aaKnown RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 BIRC3Q13489 604 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 TMEM132DQ14C87 1099 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 KYAT1Q16773 422 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 DUOXA2Q1HG44 320 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 KLHDC7AQ5VTJ3 777 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 E4F1Q66K89 784 aaPredicted RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 HELQQ8TDG4 1101 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 TRIM44Q96DX7 344 aaPredicted RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PCMTD1Q96MG8 357 aaPredicted RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 ZNF830Q96NB3 372 aaPredicted RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PPP1R10Q96QC0 940 aaKnown RBP11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PAAF1Q9BRP4 392 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 PLEKHA5Q9HAU0 1116 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 NLRC4Q9NPP4 1024 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 RAB20Q9NX57 234 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 HCSTQ9UBK5 93 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 FHOD1Q9Y613 1164 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 KIAA1671Q9BY89 1806 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 ITIH6Q6UXX5 1313 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 GBF1Q92538 1859 aa11.85□□□□□ -0.51
SCN9A-205ENST00000454569 POMCP01189 267 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 ITGB3P05106 788 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 TMEM191BP0C7N4 346 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms