RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ARNTLO00327 626 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 EPB41L2O43491 1005 aaKnown RBP15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CHRNB1P11230 501 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 ATF2P15336 505 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 XBP1P17861 261 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CCR2P41597 374 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CCR3P51677 355 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 MLLT6P55198 1093 aaPredicted RBP15.87■□□□□ 0.13
HMGN1-208ENST00000443046 ROR1Q01973 937 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 NR5A1Q13285 461 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 GAS6Q14393 721 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 PPP2R5DQ14738 602 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CSRP2Q16527 193 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CALCRLQ16602 461 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 LPAL2Q16609 132 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CENPQQ7L2Z9 268 aaPredicted RBP15.87■□□□□ 0.13
HMGN1-208ENST00000443046 FAM3CQ92520 227 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 CCDC43Q96MW1 224 aaKnown RBP15.87■□□□□ 0.13
HMGN1-208ENST00000443046 BRD9Q9H8M2 597 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 TRPV4Q9HBA0 871 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 SEMA4GQ9NTN9 838 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 RAB23Q9ULC3 237 aa15.87■□□□□ 0.13
HMGN1-208ENST00000443046 WDFY3Q8IZQ1 3526 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.86■□□□□ 0.13
HMGN1-208ENST00000443046 ZNF197O14709 1029 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 HRO43593 1189 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 TRAPPC3O43617 180 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 MOSPD3O75425 235 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 CDKL5O76039 1030 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 REC8O95072 547 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 PAPSS2O95340 614 aaPredicted RBP15.86■□□□□ 0.13
HMGN1-208ENST00000443046 SEC24AO95486 1093 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 LRG1P02750 347 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 PRKCBP05771 671 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 PSMC3P17980 439 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 BRCC3P46736 316 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 MRPL58Q14197 206 aaKnown RBP15.86■□□□□ 0.13
HMGN1-208ENST00000443046 MAPK6Q16659 721 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 DCAF4L1Q3SXM0 396 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 XKR4Q5GH76 650 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 VITQ6UXI7 678 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 ALKAL1Q6UXT8 129 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 MAEAQ7L5Y9 396 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 ZSWIM3Q96MP5 696 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 CORO1BQ9BR76 489 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 ADPGKQ9BRR6 497 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 GDAQ9Y2T3 454 aa15.86■□□□□ 0.13
HMGN1-208ENST00000443046 SMIM28A0A1B0GU29 152 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 I3L4J1 428 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 WNT7AO00755 349 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 CTDNEP1O95476 244 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 ATP2B1P20020 1258 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 TXKP42681 527 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 NAMPTP43490 491 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 CXCL12P48061 93 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 SATB1Q01826 763 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 SOX4Q06945 474 aaPredicted RBP15.85■□□□□ 0.13
HMGN1-208ENST00000443046 GLRA4Q5JXX5 417 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 PRR23CQ6ZRP0 262 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 CATSPER3Q86XQ3 398 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 SPEM1Q8N4L4 309 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 DEPDC1BQ8WUY9 529 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 SMARCD2Q92925 531 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 GOLGA2P5Q9HBQ8 144 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 INSL5Q9Y5Q6 135 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 PIAS3Q9Y6X2 628 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 NCANO14594 1321 aa15.85■□□□□ 0.13
HMGN1-208ENST00000443046 K7ESF4 209 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 GDF9O60383 454 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 GDI1P31150 447 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 CNR2P34972 360 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 EPHA5P54756 1037 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 DMWDQ09019 674 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 PTGDRQ13258 359 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 NT5DC1Q5TFE4 455 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 TPGS2Q68CL5 300 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 MFSD6LQ8IWD5 586 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 TUFT1Q9NNX1 390 aa15.84■□□□□ 0.13
HMGN1-208ENST00000443046 PDCD11Q14690 1871 aaKnown RBP15.84■□□□□ 0.13
HMGN1-208ENST00000443046 PRRG1O14668 218 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 SYN3O14994 580 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 FOXD2O60548 495 aaPredicted RBP15.83■□□□□ 0.12
HMGN1-208ENST00000443046 PFKFB2O60825 505 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 DTNBO60941 627 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 MED24O75448 989 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 FDPSP14324 419 aaKnown RBP15.83■□□□□ 0.12
HMGN1-208ENST00000443046 CYP11B2P19099 503 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 ELF1P32519 619 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 KRT2P35908 639 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 VIPR2P41587 438 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 SIM2Q14190 667 aaPredicted RBP15.83■□□□□ 0.12
HMGN1-208ENST00000443046 WDR44Q5JSH3 913 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 PADI6Q6TGC4 694 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 PRR23BQ6ZRT6 265 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 PDZD4Q76G19 769 aaPredicted RBP15.83■□□□□ 0.12
HMGN1-208ENST00000443046 NACC1Q96RE7 527 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 POLR3CQ9BUI4 534 aaPredicted RBP15.83■□□□□ 0.12
HMGN1-208ENST00000443046 CEP72Q9P209 647 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 FBXL5Q9UKA1 691 aa15.83■□□□□ 0.12
HMGN1-208ENST00000443046 MAFFQ9ULX9 164 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms