RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.59□□□□□ -0.39
CD44-209ENST00000433892 CCT8L1PA6NM43 557 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 HLA-DRAP01903 254 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 RALAP11233 206 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ADCY8P40145 1251 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 LIG4P49917 911 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 NLRP11P59045 1033 aaKnown RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 PRKCEQ02156 737 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 KYNUQ16719 465 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 WDR44Q5JSH3 913 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 TDRD10Q5VZ19 366 aaKnown RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 MCPH1Q8NEM0 835 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ARHGEF2Q92974 986 aaKnown RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 GPRASP2Q96D09 838 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 IFT74Q96LB3 600 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 FAM81BQ96LP2 452 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 SENP7Q9BQF6 1050 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 C11orf70Q9BRQ4 267 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 POLR3FQ9H1D9 316 aaPredicted RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 KDM4CQ9H3R0 1056 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 PTPRJQ12913 1337 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 EXTL3O43909 919 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ZC3H11AO75152 810 aaKnown RBP eCLIP12.58□□□□□ -0.4
CD44-209ENST00000433892 PSAPP07602 524 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ATF2P15336 505 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 DPEP1P16444 411 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 PIK3CAP42336 1068 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 SLC1A1P43005 524 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 PTK6Q13882 451 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 MTERF2Q49AM1 385 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 SNRNP48Q6IEG0 339 aaKnown RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 FUKQ8N0W3 1084 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 CCDC134Q9H6E4 229 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ATP6V0A4Q9HBG4 840 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 CD248Q9HCU0 757 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 JPH1Q9HDC5 661 aaPredicted RBP12.58□□□□□ -0.4
CD44-209ENST00000433892 SAMD15Q9P1V8 674 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ARHGAP28Q9P2N2 729 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 ANAPC5Q9UJX4 755 aa12.58□□□□□ -0.4
CD44-209ENST00000433892 TTC4O95801 387 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 GAS8O95995 478 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 MYBL1P10243 752 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 KCNA3P22001 575 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 DSG3P32926 999 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 GJC1P36383 396 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ACTR2P61160 394 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 CENPCQ03188 943 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ZACNQ401N2 412 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 SWT1Q5T5J6 900 aaKnown RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 MON1BQ7L1V2 547 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TAX1BP1Q86VP1 789 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ZNF677Q86XU0 584 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ATL2Q8NHH9 583 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 GRK7Q8WTQ7 553 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 DYDC1Q8WWB3 177 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 MAIP1Q8WWC4 291 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 P3H4Q92791 437 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TMEM143Q96AN5 459 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 SCLT1Q96NL6 688 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 MLXIPLQ9NP71 852 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 USTQ9Y2C2 406 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 UMODL1Q5DID0 1318 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TMEM120BA0PK00 339 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 THAP12O43422 761 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 PROSCO94903 275 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 VNN1O95497 513 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 C4BPAP04003 597 aaKnown RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 CYP1A1P04798 512 aaPredicted RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 SSR1P43307 286 aaKnown RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 TAS2R40P59535 323 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 PSMD6Q15008 389 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 XRRA1Q6P2D8 792 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 CYB5D1Q6P9G0 228 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TMEM270Q6UE05 265 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 SYDE1Q6ZW31 735 aaPredicted RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 PRUNE1Q86TP1 453 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TRIM11Q96F44 468 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ZBTB45Q96K62 511 aaPredicted RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 SERPINB12Q96P63 405 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 TRAIPQ9BWF2 469 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 HAPLN2Q9GZV7 340 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 APOBEC3GQ9HC16 384 aaKnown RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 HOMER3Q9NSC5 361 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 ADAM22Q9P0K1 906 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 SLC9A2Q9UBY0 812 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 AGO2Q9UKV8 859 aaKnown RBP12.57□□□□□ -0.4
CD44-209ENST00000433892 CD2APQ9Y5K6 639 aa12.57□□□□□ -0.4
CD44-209ENST00000433892 FER1L6Q2WGJ9 1857 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 MAFGO15525 162 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 GJB6O95452 261 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 GHRP10912 638 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 CD58P19256 250 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 ACO1P21399 889 aaKnown RBP12.56□□□□□ -0.4
CD44-209ENST00000433892 MAN1A1P33908 653 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 RTP1P59025 263 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 BPIFB4P59827 614 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 CLDN10P78369 228 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 KLF1Q13351 362 aaPredicted RBP12.56□□□□□ -0.4
CD44-209ENST00000433892 ITIH4Q14624 930 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 ZBTB41Q5SVQ8 909 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms